Session Information

The session information records the versions of all the packages used in the generation of the present document.

sessionInfo()

## R version 3.1.1 (2014-07-10)
## Platform: x86_64-unknown-linux-gnu (64-bit)
## 
## locale:
## [1] C
## 
## attached base packages:
## [1] parallel  stats4    methods   stats     graphics  grDevices utils    
## [8] datasets  base     
## 
## other attached packages:
##  [1] edgeR_3.8.2             limma_3.22.1            DESeq2_1.6.1           
##  [4] RcppArmadillo_0.4.500.0 Rcpp_0.11.3             GenomicRanges_1.18.1   
##  [7] GenomeInfoDb_1.2.2      IRanges_2.0.0           S4Vectors_0.4.0        
## [10] BiocGenerics_0.12.0     QoRTsExampleData_0.3.20 QoRTs_1.0.1            
## [13] Cairo_1.5-6             knitr_1.11             
## 
## loaded via a namespace (and not attached):
##  [1] AnnotationDbi_1.28.1 BBmisc_1.8           BatchJobs_1.5       
##  [4] Biobase_2.26.0       BiocParallel_1.0.0   BiocStyle_1.4.1     
##  [7] DBI_0.3.1            Formula_1.1-2        Hmisc_3.14-5        
## [10] MASS_7.3-35          RColorBrewer_1.0-5   RSQLite_1.0.0       
## [13] XML_3.98-1.1         XVector_0.6.0        acepack_1.3-3.3     
## [16] annotate_1.44.0      base64enc_0.1-2      brew_1.0-6          
## [19] checkmate_1.5.0      cluster_1.15.3       codetools_0.2-9     
## [22] colorspace_1.2-4     digest_0.6.4         evaluate_0.7.2      
## [25] fail_1.2             foreach_1.4.2        foreign_0.8-61      
## [28] formatR_1.0          genefilter_1.48.1    geneplotter_1.44.0  
## [31] ggplot2_1.0.0        grid_3.1.1           gtable_0.1.2        
## [34] highr_0.4            iterators_1.0.7      lattice_0.20-29     
## [37] latticeExtra_0.6-26  locfit_1.5-9.1       munsell_0.4.2       
## [40] nnet_7.3-8           plyr_1.8.1           proto_0.3-10        
## [43] reshape2_1.4         rpart_4.1-8          scales_0.2.4        
## [46] sendmailR_1.2-1      splines_3.1.1        stringr_0.6.2       
## [49] survival_2.37-7      tools_3.1.1          xtable_1.7-4