Session Information

The session information records the versions of all the packages used in the generation of the present document.

sessionInfo()

## R version 3.2.2 (2015-08-14)
## Platform: x86_64-pc-linux-gnu (64-bit)
## 
## locale:
## [1] C
## 
## attached base packages:
## [1] methods   stats     graphics  grDevices utils     datasets  base     
## 
## other attached packages:
## [1] QoRTsExampleData_1.0.7 QoRTs_1.0.7            Cairo_1.5-9           
## [4] knitr_1.11            
## 
## loaded via a namespace (and not attached):
##  [1] SummarizedExperiment_1.0.1 genefilter_1.52.0         
##  [3] locfit_1.5-9.1             reshape2_1.4.1            
##  [5] splines_3.2.2              lattice_0.20-33           
##  [7] colorspace_1.2-6           stats4_3.2.2              
##  [9] survival_2.38-3            XML_3.98-1.3              
## [11] foreign_0.8-65             DBI_0.3.1                 
## [13] BiocParallel_1.4.0         BiocGenerics_0.16.1       
## [15] RColorBrewer_1.1-2         lambda.r_1.1.7            
## [17] plyr_1.8.3                 stringr_1.0.0             
## [19] zlibbioc_1.16.0            munsell_0.4.2             
## [21] gtable_0.1.2               futile.logger_1.4.1       
## [23] DESeq2_1.10.0              evaluate_0.8              
## [25] latticeExtra_0.6-26        Biobase_2.30.0            
## [27] RcppArmadillo_0.6.200.2.0  geneplotter_1.48.0        
## [29] IRanges_2.4.1              GenomeInfoDb_1.6.1        
## [31] parallel_3.2.2             AnnotationDbi_1.32.0      
## [33] highr_0.5.1                proto_0.3-10              
## [35] Rcpp_0.12.1                acepack_1.3-3.3           
## [37] xtable_1.8-0               edgeR_3.12.0              
## [39] scales_0.3.0               formatR_1.2.1             
## [41] limma_3.26.2               S4Vectors_0.8.1           
## [43] Hmisc_3.17-0               annotate_1.48.0           
## [45] XVector_0.10.0             gridExtra_2.0.0           
## [47] BiocStyle_1.8.0            ggplot2_1.0.1             
## [49] digest_0.6.8               stringi_1.0-1             
## [51] GenomicRanges_1.22.1       grid_3.2.2                
## [53] tools_3.2.2                magrittr_1.5              
## [55] RSQLite_1.0.0              Formula_1.2-1             
## [57] cluster_2.0.3              futile.options_1.0.0      
## [59] MASS_7.3-43                rpart_4.1-10              
## [61] nnet_7.3-10