Session Information

The session information records the versions of all the packages used in the generation of the present document.

sessionInfo()

## R version 3.2.3 (2015-12-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Scientific Linux release 6.7 (Carbon)
## 
## locale:
## [1] C
## 
## attached base packages:
## [1] methods   stats     graphics  grDevices utils     datasets  base     
## 
## other attached packages:
## [1] QoRTsExampleData_1.1.6 QoRTs_1.1.6            Cairo_1.5-9           
## [4] knitr_1.12.3          
## 
## loaded via a namespace (and not attached):
##  [1] Rcpp_0.12.3                RColorBrewer_1.1-2        
##  [3] formatR_1.2.1              futile.logger_1.4.1       
##  [5] GenomeInfoDb_1.6.3         highr_0.5.1               
##  [7] plyr_1.8.3                 XVector_0.10.0            
##  [9] futile.options_1.0.0       tools_3.2.3               
## [11] zlibbioc_1.16.0            rpart_4.1-10              
## [13] RSQLite_1.0.0              annotate_1.48.0           
## [15] evaluate_0.8               gtable_0.1.2              
## [17] lattice_0.20-33            DBI_0.3.1                 
## [19] parallel_3.2.3             RcppArmadillo_0.6.500.4.0 
## [21] gridExtra_2.0.0            genefilter_1.52.1         
## [23] cluster_2.0.3              stringr_1.0.0             
## [25] S4Vectors_0.8.11           IRanges_2.4.7             
## [27] locfit_1.5-9.1             nnet_7.3-11               
## [29] stats4_3.2.3               grid_3.2.3                
## [31] Biobase_2.30.0             AnnotationDbi_1.32.3      
## [33] XML_3.98-1.3               survival_2.38-3           
## [35] BiocParallel_1.4.3         foreign_0.8-66            
## [37] limma_3.26.8               latticeExtra_0.6-28       
## [39] Formula_1.2-1              edgeR_3.12.0              
## [41] geneplotter_1.48.0         DESeq2_1.10.1             
## [43] ggplot2_2.0.0              lambda.r_1.1.7            
## [45] magrittr_1.5               Hmisc_3.17-1              
## [47] scales_0.3.0               BiocGenerics_0.16.1       
## [49] GenomicRanges_1.22.4       splines_3.2.3             
## [51] SummarizedExperiment_1.0.2 xtable_1.8-2              
## [53] BiocStyle_1.8.0            colorspace_1.2-6          
## [55] stringi_1.0-1              acepack_1.3-3.3           
## [57] munsell_0.4.3