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browser position chr14:107664321-107759974

track CASEvCTRL_wiggle
container multiWig
aggregate transparentOverlay
showSubtrackColorOnUi on
shortLabel Avg Coverage CASEvCTRL
longLabel Mean Normalized Coverage (CASE red, CTRL blue)
boxedCgf on
autoScale on
visibility full
alwaysZero on
type bigWig

        track CTRL_FWD_SUB
        parent CASEvCTRL_wiggle
        type bigWig
        bigDataUrl tracks/CTRL.fwd.bw
        color 0,0,180
        altColor 0,0,180
        
        track CTRL_REV_SUB
        parent CASEvCTRL_wiggle
        type bigWig
        bigDataUrl tracks/CTRL.rev.bw
        color 0,0,180
        altColor 0,0,180  

        track CASE_FWD_SUB
        parent CASEvCTRL_wiggle
        type bigWig
        bigDataUrl tracks/CASE.fwd.bw
        color 180,0,0
        altColor 180,0,0
        
        track CASE_REV_SUB
        parent CASEvCTRL_wiggle
        type bigWig
        bigDataUrl tracks/CASE.rev.bw
        color 180,0,0
        altColor 180,0,0  

track CASEvCTRL_Junctions
shortLabel CASEvCTRL Junctions
longLabel CASEvCTRL Mean Normalized Splice Junction coverage (CASE red, CTRL blue)
description CASEvCTRL Mean Normalized Splice Junction coverage (CASE red, CTRL blue)
visibility pack
type bigBed 12 .
bigDataUrl tracks/CASE.vs.CTRL.bb
useScore 0
itemRgb "On"

track CASEvCTRL_orphanSJ
shortLabel CASEvCTRL OrphanSJ
longLabel CASEvCTRL Mean Normalized Orphan/Ambig SJ coverage (CASE red, CTRL blue)
description CASEvCTRL Mean Normalized Orphan/Ambig SJ coverage (CASE red, CTRL blue)
visibility pack
type bigBed 12 .
bigDataUrl tracks/CASE.vs.CTRL.orphan.bb
useScore 0
itemRgb "On"


track JunctionSeq_EXONS
shortLabel JS Exons
longLabel JunctionSeq Exon Coverage (CASE red, CTRL blue)
visibility pack
type bigBed 12 .
bigDataUrl tracks/JS.allGenes.exonCoverage.bb
useScore 0
itemRgb "On"

track JunctionSeq_JUNCTIONS
shortLabel JS Jnctns
longLabel JunctionSeq Junction Coverage (CASE red, CTRL blue)
visibility pack
type bigBed 12 .
bigDataUrl tracks/JS.allGenes.junctionCoverage.bb
useScore 0
itemRgb "On"

track JunctionSeq_TEST
shortLabel JS Sig p-vals
longLabel JunctionSeq Significant features (With Adjusted p-values)
visibility pack
type bigBed 12 .
bigDataUrl tracks/JS.sigGenes.pvalues.bb
useScore 0
itemRgb "On"

track CTRL_FWD
shortLabel CTRL_FWD
longLabel CTRL Coverage, Fwd Strand
type bigWig
bigDataUrl tracks/CTRL.fwd.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on

track CTRL_REV
shortLabel CTRL_REV
longLabel CTRL Coverage, Rev Strand
type bigWig
bigDataUrl tracks/CTRL.rev.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on

track CASE_FWD
shortLabel CASE_FWD
longLabel CASE Coverage, Fwd Strand
type bigWig
bigDataUrl tracks/CASE.fwd.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on

track CASE_REV
shortLabel CASE_REV
longLabel CASE Coverage, Rev Strand
type bigWig
bigDataUrl tracks/CASE.rev.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on




track SAMP1_FWD
shortLabel SAMP1_FWD
longLabel SAMP1 Coverage, Fwd Strand
type bigWig
bigDataUrl tracks/SAMP1.fwd.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on

track SAMP1_REV
shortLabel SAMP1_REV
longLabel SAMP1 Coverage, Rev Strand
type bigWig
bigDataUrl tracks/SAMP1.rev.bw
itemRgb on
color 0,0,0
altColor 0,0,0
boxedCgf on
autoScale on
visibility hide
alwaysZero on

track SAMP1_JCT
shortLabel SAMP1_JCT
longLabel SAMP1 Splice Junction Counts
visibility pack
type bigBed 12 .
bigDataUrl tracks/SAMP1.bb
useScore 0