| get.summary.table {QoRTs} | R Documentation |
Retrieves and compiles a summary data table.
get.summary.table(res, outfile, debugMode);
get.size.factors(res,
sf.method = c("DESeq2","DESeq2_GEO","TC",
"edgeR","edgeR_TMM","edgeR_UQ","edgeR_RLE"),
outfile, debugMode)
res |
A |
outfile |
Optional. A file name where the table should be written. |
sf.method |
The size factor method to use. Note that most of these methods (except "TC") are reliant on external packages not included with QoRTs. You will need to install DESeq2 and edgeR to use these methods. |
debugMode |
Logical. If TRUE, debugging data will be printed to the console. |
Returns summary data in table form.
data(res,package="QoRTsExampleData");
get.summary.table(res);
## SAMP1_RG1 SAMP1_RG2
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.546360e+05 2.574510e+05
## TOTAL_READ_PAIRS 3.057390e+05 3.090550e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 5.110300e+04 5.160400e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.141950e+05 4.206370e+05
## BENCHMARK_MinutesOnSamIteration 2.080000e+00 1.750000e+00
## BENCHMARK_MinutesPerMillionReads 6.810000e+00 5.660000e+00
## BENCHMARK_MinutesPerMillionGoodReads 8.180000e+00 6.800000e+00
## ReadPairs_AmbigGene 5.600000e+02 5.760000e+02
## ReadPairs_UniqueGene 9.633100e+04 9.787900e+04
## ReadPairs_UniqueGene_CDS 7.585100e+04 7.686300e+04
## ReadPairs_UniqueGene_UTR 2.048000e+04 2.101600e+04
## ReadPairs_NoGene 1.577450e+05 1.589960e+05
## ReadPairs_NoGene_Intron 8.158100e+04 8.211900e+04
## ReadPairs_NoGene_OneKbFromGene 6.214000e+03 6.235000e+03
## ReadPairs_NoGene_TenKbFromGene 1.498100e+04 1.499000e+04
## ReadPairs_NoGene_MiddleOfNowhere 5.496900e+04 5.565200e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.320000e+02 5.320000e+02
## Genes_WithNonzeroCounts 5.320000e+02 5.320000e+02
## ReadPairs_ADV_NoGene_Intron 7.616400e+04 7.687700e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.158100e+04 8.211900e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.419630e+05 2.447180e+05
## InsertSizeCalc_lt_readLen 6.169000e+03 6.460000e+03
## InsertSizeCalc_eq_readLen 2.414000e+03 2.482000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.012020e+05 2.034710e+05
## InsertSizeCalc_ge_2xreadLen 3.217800e+04 3.230500e+04
## InsertSizeCalc_Drop_TOTAL 1.267300e+04 1.273300e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.052000e+03 1.053000e+03
## InsertSizeCalc_Drop_REASON3 1.162100e+04 1.168000e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.500000e-01 4.500000e-01
## AVG_GC 4.500000e-01 4.500000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.250000e+02 5.250000e+02
## AggregateGenes_WithReads 5.280000e+02 5.280000e+02
## SpliceLoci 9.348000e+03 9.374000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.784000e+03 2.770000e+03
## SpliceLoci_Known_FewReads 1.356000e+03 1.351000e+03
## SpliceLoci_Known_ManyReads 2.667000e+03 2.686000e+03
## SpliceLoci_Novel 2.541000e+03 2.567000e+03
## SpliceLoci_Novel_FewReads 2.277000e+03 2.311000e+03
## SpliceLoci_Novel_ManyReads 2.640000e+02 2.560000e+02
## SpliceEvents 6.424700e+04 6.486000e+04
## SpliceEvents_KnownLoci 5.896300e+04 5.952300e+04
## SpliceEvents_KnownLociWithFewReads 2.422000e+03 2.450000e+03
## SpliceEvents_KnownLociWithManyReads 5.654100e+04 5.707300e+04
## SpliceEvents_NovelLoci 5.284000e+03 5.337000e+03
## SpliceEvents_NovelLociWithFewReads 3.002000e+03 3.000000e+03
## SpliceEvents_NovelLociWithManyReads 2.282000e+03 2.337000e+03
## StrandTest_frFirstStrand 9.354500e+04 9.512200e+04
## StrandTest_frSecondStrand 2.050000e+03 2.133000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.760000e+02 4.540000e+02
## StrandTest_ambig_noGenes 1.585650e+05 1.597420e+05
## StrandTest_ambig_other 0.000000e+00 0.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 1.978000e+03 1.965000e+03
## insertionLoci 1.335000e+03 1.334000e+03
## deletionEventCt 2.989000e+03 3.006000e+03
## insertionEventCt 2.009000e+03 2.013000e+03
## highCoverageDeletionLoci 3.900000e+01 3.700000e+01
## highCoverageInsertionLoci 2.200000e+01 1.400000e+01
## OnTargetCount 1.943080e+05 1.965210e+05
## OffTargetCount 6.032800e+04 6.093000e+04
## OnTargetReadBases 5.814397e+07 5.889422e+07
## OnTargetReadPairBases 4.169822e+07 4.222241e+07
## AvgTargetReadDepth 1.104000e+01 1.121000e+01
## AvgTargetReadPairDepth 7.890000e+00 7.990000e+00
## TargetReadDepth 1.700000e+00 1.720000e+00
## TargetReadPairDepth 1.220000e+00 1.240000e+00
## OnTargetFraction 7.600000e-01 7.600000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 2.953000e+03 2.971000e+03
## PAIR_CONTAINS_INS 2.038000e+03 2.038000e+03
## PAIR_CONTAINS_INS_AND_DEL 6.400000e+01 4.200000e+01
## PAIR_CONTAINS_INDEL 4.927000e+03 4.967000e+03
## PAIR_CONTAINS_NO_INDEL 2.497090e+05 2.524840e+05
## READ_CONTAINS_DEL_R1 1.631000e+03 1.660000e+03
## READ_CONTAINS_INS_R1 1.192000e+03 1.204000e+03
## READ_CONTAINS_NO_INDEL_R1 2.518320e+05 2.545940e+05
## READ_CONTAINS_DEL_R2 1.322000e+03 1.311000e+03
## READ_CONTAINS_INS_R2 8.460000e+02 8.340000e+02
## READ_CONTAINS_NO_INDEL_R2 2.524820e+05 2.553210e+05
## NO_REF_BASE_SWAP_R1 2.058910e+05 2.076570e+05
## HAS_REF_BASE_SWAP_R1 4.874500e+04 4.979400e+04
## NO_REF_BASE_SWAP_R2 2.106560e+05 2.141570e+05
## HAS_REF_BASE_SWAP_R2 4.398000e+04 4.329400e+04
## PERFECT_REF_MATCH_PAIR 1.839780e+05 1.864530e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 3.267700e+04 3.278100e+04
## OM_overlap 2.219590e+05 2.246700e+05
## OM_BAD_OVERLAP 0.000000e+00 0.000000e+00
## OM_overlap_Match 1.942630e+05 1.966450e+05
## OM_overlap_mismatch 2.769600e+04 2.802500e+04
## NumReadsAtMaxReadLength_R1 2.546360e+05 2.574510e+05
## NumReadsAtMaxReadLength_R2 2.546360e+05 2.574510e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.600000e-01 4.600000e-01
## FQ_AVG_GC_R2 4.500000e-01 4.500000e-01
## FQ_AVG_GC 4.500000e-01 4.500000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 4.023000e+03 4.037000e+03
## SpliceLoci_Novel_Covered 2.541000e+03 2.567000e+03
## SpliceLoci_Covered 6.564000e+03 6.604000e+03
## InsertSize_Mean 1.010700e+03 1.070760e+03
## InsertSize_Median 1.400000e+02 1.400000e+02
## GC_byPair_Mean 9.085000e+01 9.088000e+01
## GC_byPair_Median 9.200000e+01 9.200000e+01
## GC_byRead_Mean 4.542000e+01 4.544000e+01
## GC_byRead_Median 4.600000e+01 4.600000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Mean 5.000000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.800000e-01 4.800000e-01
## GeneBodyCoverage_UMQuartile_Median 4.900000e-01 4.600000e-01
## geneDiversityProfile_top1count 5.907000e+03 5.973000e+03
## geneDiversityProfile_top10count 2.228700e+04 2.248900e+04
## geneDiversityProfile_top100count 7.242300e+04 7.349500e+04
## geneDiversityProfile_top1000count 9.633100e+04 9.787900e+04
## geneDiversityProfile_top1pct 6.000000e-02 6.000000e-02
## geneDiversityProfile_top10pct 2.300000e-01 2.300000e-01
## geneDiversityProfile_top100pct 7.500000e-01 7.500000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.652980e+05 4.722410e+05
## total.aligned.rate 6.600000e-01 6.500000e-01
## aligned.and.pf.rate 5.500000e-01 5.500000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.297707e+01 3.231002e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.174552e+01 2.186469e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.719538e+01 1.694806e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.145643e+01 1.139010e+01
## overlapMismatchRate.byMinQual.noIndel_9 9.303520e+00 8.923502e+00
## overlapMismatchRate.byMinQual.noIndel_10 8.242726e+00 7.762340e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.321592e+00 3.337062e+00
## overlapMismatchRate.byMinQual.noIndel_12 4.154012e+00 4.388304e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.335117e+00 2.462992e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.568127e+00 2.396740e+00
## overlapMismatchRate.byMinQual.noIndel_15 3.146431e+00 3.063045e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.688750e+00 1.884470e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.866294e+00 1.806466e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.378854e+00 1.344544e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.483976e+00 1.424614e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.056718e+00 1.050955e+00
## overlapMismatchRate.byMinQual.noIndel_21 5.840990e-01 6.079094e-01
## overlapMismatchRate.byMinQual.noIndel_22 5.886412e-01 5.531140e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.707409e-01 6.339419e-01
## overlapMismatchRate.byMinQual.noIndel_24 5.764819e-01 5.221174e-01
## overlapMismatchRate.byMinQual.noIndel_25 4.585008e-01 4.536745e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.615892e-01 2.897900e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.657724e-01 3.642116e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.226905e-01 2.002198e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.329735e-01 2.349179e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.967023e-01 1.944103e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.636914e-01 1.784144e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.487395e-01 1.425715e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.504724e-01 1.580375e-01
## overlapMismatchRate.byMinQual.noIndel_34 9.669044e-02 1.033521e-01
## overlapMismatchRate.byMinQual.noIndel_35 9.371049e-02 9.829658e-02
## overlapMismatchRate.byMinQual.noIndel_36 9.288738e-02 1.048831e-01
## overlapMismatchRate.byMinQual.noIndel_37 9.104735e-02 9.572137e-02
## overlapMismatchRate.byMinQual.noIndel_38 7.716711e-02 9.257584e-02
## overlapMismatchRate.byMinQual.noIndel_39 8.502938e-02 1.033341e-01
## overlapMismatchRate.byMinQual.noIndel_40 7.216960e-02 8.060503e-02
## overlapMismatchRate.byMinQual.noIndel_41 6.656105e-02 7.860732e-02
## SAMP1_RG3 SAMP2_RG1
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.673390e+05 2.673820e+05
## TOTAL_READ_PAIRS 3.214110e+05 3.094170e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 5.407200e+04 4.203500e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.466190e+05 4.193700e+05
## BENCHMARK_MinutesOnSamIteration 1.670000e+00 1.330000e+00
## BENCHMARK_MinutesPerMillionReads 5.190000e+00 4.310000e+00
## BENCHMARK_MinutesPerMillionGoodReads 6.230000e+00 4.990000e+00
## ReadPairs_AmbigGene 5.990000e+02 5.240000e+02
## ReadPairs_UniqueGene 1.012610e+05 9.264200e+04
## ReadPairs_UniqueGene_CDS 7.977200e+04 7.253600e+04
## ReadPairs_UniqueGene_UTR 2.148900e+04 2.010600e+04
## ReadPairs_NoGene 1.654790e+05 1.742160e+05
## ReadPairs_NoGene_Intron 8.400000e+04 8.340700e+04
## ReadPairs_NoGene_OneKbFromGene 6.542000e+03 5.904000e+03
## ReadPairs_NoGene_TenKbFromGene 1.562500e+04 1.698100e+04
## ReadPairs_NoGene_MiddleOfNowhere 5.931200e+04 6.792400e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.370000e+02 5.260000e+02
## Genes_WithNonzeroCounts 5.270000e+02 5.380000e+02
## ReadPairs_ADV_NoGene_Intron 8.147900e+04 9.080900e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.400000e+04 8.340700e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.540420e+05 2.531460e+05
## InsertSizeCalc_lt_readLen 6.465000e+03 6.465000e+03
## InsertSizeCalc_eq_readLen 2.597000e+03 2.680000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.111590e+05 2.104970e+05
## InsertSizeCalc_ge_2xreadLen 3.382100e+04 3.350400e+04
## InsertSizeCalc_Drop_TOTAL 1.329700e+04 1.423600e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 9.950000e+02 1.104000e+03
## InsertSizeCalc_Drop_REASON3 1.230200e+04 1.313200e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.500000e-01 4.400000e-01
## AVG_GC 4.500000e-01 4.500000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.330000e+02 5.190000e+02
## AggregateGenes_WithReads 5.200000e+02 5.340000e+02
## SpliceLoci 9.589000e+03 1.070500e+04
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.768000e+03 2.837000e+03
## SpliceLoci_Known_FewReads 1.308000e+03 1.398000e+03
## SpliceLoci_Known_ManyReads 2.731000e+03 2.572000e+03
## SpliceLoci_Novel 2.782000e+03 3.898000e+03
## SpliceLoci_Novel_FewReads 2.482000e+03 3.449000e+03
## SpliceLoci_Novel_ManyReads 3.000000e+02 4.490000e+02
## SpliceEvents 6.764400e+04 6.455800e+04
## SpliceEvents_KnownLoci 6.172100e+04 5.611400e+04
## SpliceEvents_KnownLociWithFewReads 2.353000e+03 2.529000e+03
## SpliceEvents_KnownLociWithManyReads 5.936800e+04 5.358500e+04
## SpliceEvents_NovelLoci 5.923000e+03 8.444000e+03
## SpliceEvents_NovelLociWithFewReads 3.298000e+03 4.668000e+03
## SpliceEvents_NovelLociWithManyReads 2.625000e+03 3.776000e+03
## StrandTest_frFirstStrand 9.830700e+04 8.978200e+04
## StrandTest_frSecondStrand 2.227000e+03 7.205000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.450000e+02 4.030000e+02
## StrandTest_ambig_noGenes 1.663590e+05 1.699890e+05
## StrandTest_ambig_other 1.000000e+00 3.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.090000e+03 2.036000e+03
## insertionLoci 1.359000e+03 1.492000e+03
## deletionEventCt 3.169000e+03 3.062000e+03
## insertionEventCt 2.100000e+03 2.137000e+03
## highCoverageDeletionLoci 3.800000e+01 3.900000e+01
## highCoverageInsertionLoci 1.900000e+01 1.600000e+01
## OnTargetCount 2.023290e+05 2.022960e+05
## OffTargetCount 6.501000e+04 6.508600e+04
## OnTargetReadBases 6.071255e+07 5.986593e+07
## OnTargetReadPairBases 4.346825e+07 4.274775e+07
## AvgTargetReadDepth 1.161000e+01 1.122000e+01
## AvgTargetReadPairDepth 8.280000e+00 7.960000e+00
## TargetReadDepth 1.780000e+00 1.750000e+00
## TargetReadPairDepth 1.270000e+00 1.250000e+00
## OnTargetFraction 7.600000e-01 7.600000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.114000e+03 3.016000e+03
## PAIR_CONTAINS_INS 2.198000e+03 2.123000e+03
## PAIR_CONTAINS_INS_AND_DEL 4.000000e+01 6.400000e+01
## PAIR_CONTAINS_INDEL 5.272000e+03 5.075000e+03
## PAIR_CONTAINS_NO_INDEL 2.620670e+05 2.623070e+05
## READ_CONTAINS_DEL_R1 1.685000e+03 1.710000e+03
## READ_CONTAINS_INS_R1 1.299000e+03 1.253000e+03
## READ_CONTAINS_NO_INDEL_R1 2.643640e+05 2.644380e+05
## READ_CONTAINS_DEL_R2 1.429000e+03 1.306000e+03
## READ_CONTAINS_INS_R2 8.990000e+02 8.700000e+02
## READ_CONTAINS_NO_INDEL_R2 2.650240e+05 2.652210e+05
## NO_REF_BASE_SWAP_R1 2.229610e+05 2.161710e+05
## HAS_REF_BASE_SWAP_R1 4.437800e+04 5.121100e+04
## NO_REF_BASE_SWAP_R2 2.256110e+05 2.208440e+05
## HAS_REF_BASE_SWAP_R2 4.172800e+04 4.653800e+04
## PERFECT_REF_MATCH_PAIR 2.021540e+05 1.931360e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 3.427900e+04 3.401800e+04
## OM_overlap 2.330590e+05 2.333640e+05
## OM_BAD_OVERLAP 1.000000e+00 0.000000e+00
## OM_overlap_Match 2.176600e+05 2.051090e+05
## OM_overlap_mismatch 1.539900e+04 2.825500e+04
## NumReadsAtMaxReadLength_R1 2.673390e+05 2.673820e+05
## NumReadsAtMaxReadLength_R2 2.673390e+05 2.673820e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.600000e-01 4.500000e-01
## FQ_AVG_GC_R2 4.500000e-01 4.400000e-01
## FQ_AVG_GC 4.600000e-01 4.500000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 4.039000e+03 3.970000e+03
## SpliceLoci_Novel_Covered 2.782000e+03 3.898000e+03
## SpliceLoci_Covered 6.821000e+03 7.868000e+03
## InsertSize_Mean 1.093450e+03 1.041390e+03
## InsertSize_Median 1.400000e+02 1.390000e+02
## GC_byPair_Mean 9.089000e+01 9.037000e+01
## GC_byPair_Median 9.200000e+01 9.100000e+01
## GC_byRead_Mean 4.545000e+01 4.518000e+01
## GC_byRead_Median 4.600000e+01 4.600000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 4.800000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.600000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.700000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Median 4.600000e-01 4.600000e-01
## geneDiversityProfile_top1count 6.165000e+03 4.940000e+03
## geneDiversityProfile_top10count 2.315700e+04 2.185900e+04
## geneDiversityProfile_top100count 7.583300e+04 7.032000e+04
## geneDiversityProfile_top1000count 1.012610e+05 9.264200e+04
## geneDiversityProfile_top1pct 6.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.300000e-01 2.400000e-01
## geneDiversityProfile_top100pct 7.500000e-01 7.600000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 5.006910e+05 4.614050e+05
## total.aligned.rate 6.400000e-01 6.700000e-01
## aligned.and.pf.rate 5.300000e-01 5.800000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.864699e+01 3.262251e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.648301e+01 2.206188e+01
## overlapMismatchRate.byMinQual.noIndel_7 2.020725e+01 1.732821e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.336987e+01 1.148493e+01
## overlapMismatchRate.byMinQual.noIndel_9 1.052675e+01 9.223902e+00
## overlapMismatchRate.byMinQual.noIndel_10 1.018834e+01 8.416581e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.729960e+00 3.384419e+00
## overlapMismatchRate.byMinQual.noIndel_12 5.296861e+00 4.056221e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.402824e+00 2.204750e+00
## overlapMismatchRate.byMinQual.noIndel_14 3.756686e+00 2.391304e+00
## overlapMismatchRate.byMinQual.noIndel_15 4.610493e+00 3.079474e+00
## overlapMismatchRate.byMinQual.noIndel_16 2.628161e+00 1.817575e+00
## overlapMismatchRate.byMinQual.noIndel_17 2.893157e+00 1.868038e+00
## overlapMismatchRate.byMinQual.noIndel_18 2.209443e+00 1.396150e+00
## overlapMismatchRate.byMinQual.noIndel_19 2.372771e+00 1.572989e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.549032e+00 1.082752e+00
## overlapMismatchRate.byMinQual.noIndel_21 7.135378e-01 5.806833e-01
## overlapMismatchRate.byMinQual.noIndel_22 6.191589e-01 5.035557e-01
## overlapMismatchRate.byMinQual.noIndel_23 8.738095e-01 6.508926e-01
## overlapMismatchRate.byMinQual.noIndel_24 9.055937e-01 5.861355e-01
## overlapMismatchRate.byMinQual.noIndel_25 7.514602e-01 4.630409e-01
## overlapMismatchRate.byMinQual.noIndel_26 3.216537e-01 2.530357e-01
## overlapMismatchRate.byMinQual.noIndel_27 5.593098e-01 3.566562e-01
## overlapMismatchRate.byMinQual.noIndel_28 1.891680e-01 1.918285e-01
## overlapMismatchRate.byMinQual.noIndel_29 3.616283e-01 2.187285e-01
## overlapMismatchRate.byMinQual.noIndel_30 2.471389e-01 1.727137e-01
## overlapMismatchRate.byMinQual.noIndel_31 2.326232e-01 1.504854e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.887293e-01 1.241636e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.962772e-01 1.470481e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.128368e-01 8.570961e-02
## overlapMismatchRate.byMinQual.noIndel_35 8.947654e-02 8.452378e-02
## overlapMismatchRate.byMinQual.noIndel_36 1.013164e-01 7.472652e-02
## overlapMismatchRate.byMinQual.noIndel_37 1.012667e-01 6.593479e-02
## overlapMismatchRate.byMinQual.noIndel_38 1.008678e-01 6.558875e-02
## overlapMismatchRate.byMinQual.noIndel_39 1.072612e-01 6.400321e-02
## overlapMismatchRate.byMinQual.noIndel_40 9.424454e-02 5.543078e-02
## overlapMismatchRate.byMinQual.noIndel_41 8.265078e-02 5.705678e-02
## SAMP2_RG2 SAMP2_RG3
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.701900e+05 2.837240e+05
## TOTAL_READ_PAIRS 3.122720e+05 3.285240e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 4.208200e+04 4.480000e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.256310e+05 4.475220e+05
## BENCHMARK_MinutesOnSamIteration 1.770000e+00 2.050000e+00
## BENCHMARK_MinutesPerMillionReads 5.660000e+00 6.240000e+00
## BENCHMARK_MinutesPerMillionGoodReads 6.540000e+00 7.230000e+00
## ReadPairs_AmbigGene 5.280000e+02 5.290000e+02
## ReadPairs_UniqueGene 9.310400e+04 9.720300e+04
## ReadPairs_UniqueGene_CDS 7.294100e+04 7.622200e+04
## ReadPairs_UniqueGene_UTR 2.016300e+04 2.098100e+04
## ReadPairs_NoGene 1.765580e+05 1.859920e+05
## ReadPairs_NoGene_Intron 8.405800e+04 8.736900e+04
## ReadPairs_NoGene_OneKbFromGene 6.179000e+03 6.237000e+03
## ReadPairs_NoGene_TenKbFromGene 1.714600e+04 1.798700e+04
## ReadPairs_NoGene_MiddleOfNowhere 6.917500e+04 7.439900e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.260000e+02 5.370000e+02
## Genes_WithNonzeroCounts 5.380000e+02 5.270000e+02
## ReadPairs_ADV_NoGene_Intron 9.250000e+04 9.862300e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.405800e+04 8.736900e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.556940e+05 2.685540e+05
## InsertSizeCalc_lt_readLen 6.643000e+03 6.980000e+03
## InsertSizeCalc_eq_readLen 2.708000e+03 2.900000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.121930e+05 2.227470e+05
## InsertSizeCalc_ge_2xreadLen 3.415000e+04 3.592700e+04
## InsertSizeCalc_Drop_TOTAL 1.449600e+04 1.517000e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.120000e+03 1.047000e+03
## InsertSizeCalc_Drop_REASON3 1.337600e+04 1.412300e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.500000e-01 4.500000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.180000e+02 5.310000e+02
## AggregateGenes_WithReads 5.350000e+02 5.220000e+02
## SpliceLoci 1.079300e+04 1.096600e+04
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.856000e+03 2.810000e+03
## SpliceLoci_Known_FewReads 1.418000e+03 1.411000e+03
## SpliceLoci_Known_ManyReads 2.533000e+03 2.586000e+03
## SpliceLoci_Novel 3.986000e+03 4.159000e+03
## SpliceLoci_Novel_FewReads 3.520000e+03 3.657000e+03
## SpliceLoci_Novel_ManyReads 4.660000e+02 5.020000e+02
## SpliceEvents 6.509300e+04 6.817900e+04
## SpliceEvents_KnownLoci 5.634600e+04 5.877100e+04
## SpliceEvents_KnownLociWithFewReads 2.575000e+03 2.572000e+03
## SpliceEvents_KnownLociWithManyReads 5.377100e+04 5.619900e+04
## SpliceEvents_NovelLoci 8.747000e+03 9.408000e+03
## SpliceEvents_NovelLociWithFewReads 4.759000e+03 4.960000e+03
## SpliceEvents_NovelLociWithManyReads 3.988000e+03 4.448000e+03
## StrandTest_frFirstStrand 9.014100e+04 9.410500e+04
## StrandTest_frSecondStrand 7.485000e+03 7.800000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.250000e+02 4.060000e+02
## StrandTest_ambig_noGenes 1.721380e+05 1.814120e+05
## StrandTest_ambig_other 1.000000e+00 1.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.054000e+03 2.262000e+03
## insertionLoci 1.449000e+03 1.672000e+03
## deletionEventCt 3.183000e+03 3.519000e+03
## insertionEventCt 2.136000e+03 2.390000e+03
## highCoverageDeletionLoci 4.000000e+01 4.900000e+01
## highCoverageInsertionLoci 1.700000e+01 1.900000e+01
## OnTargetCount 2.038620e+05 2.124830e+05
## OffTargetCount 6.632800e+04 7.124100e+04
## OnTargetReadBases 6.029202e+07 6.287158e+07
## OnTargetReadPairBases 4.304794e+07 4.484670e+07
## AvgTargetReadDepth 1.129000e+01 1.182000e+01
## AvgTargetReadPairDepth 8.010000e+00 8.380000e+00
## TargetReadDepth 1.760000e+00 1.840000e+00
## TargetReadPairDepth 1.260000e+00 1.310000e+00
## OnTargetFraction 7.500000e-01 7.500000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.148000e+03 3.463000e+03
## PAIR_CONTAINS_INS 2.112000e+03 2.341000e+03
## PAIR_CONTAINS_INS_AND_DEL 7.200000e+01 7.300000e+01
## PAIR_CONTAINS_INDEL 5.188000e+03 5.731000e+03
## PAIR_CONTAINS_NO_INDEL 2.650020e+05 2.779930e+05
## READ_CONTAINS_DEL_R1 1.744000e+03 1.897000e+03
## READ_CONTAINS_INS_R1 1.256000e+03 1.391000e+03
## READ_CONTAINS_NO_INDEL_R1 2.672060e+05 2.804480e+05
## READ_CONTAINS_DEL_R2 1.404000e+03 1.566000e+03
## READ_CONTAINS_INS_R2 8.560000e+02 9.500000e+02
## READ_CONTAINS_NO_INDEL_R2 2.679530e+05 2.812300e+05
## NO_REF_BASE_SWAP_R1 2.173890e+05 2.357750e+05
## HAS_REF_BASE_SWAP_R1 5.280100e+04 4.794900e+04
## NO_REF_BASE_SWAP_R2 2.240020e+05 2.388380e+05
## HAS_REF_BASE_SWAP_R2 4.618800e+04 4.488600e+04
## PERFECT_REF_MATCH_PAIR 1.951570e+05 2.135210e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 3.463800e+04 3.640400e+04
## OM_overlap 2.355520e+05 2.473200e+05
## OM_BAD_OVERLAP 0.000000e+00 0.000000e+00
## OM_overlap_Match 2.067340e+05 2.309780e+05
## OM_overlap_mismatch 2.881800e+04 1.634200e+04
## NumReadsAtMaxReadLength_R1 2.701900e+05 2.837240e+05
## NumReadsAtMaxReadLength_R2 2.701900e+05 2.837240e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.500000e-01 4.500000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.500000e-01 4.500000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 3.951000e+03 3.997000e+03
## SpliceLoci_Novel_Covered 3.986000e+03 4.159000e+03
## SpliceLoci_Covered 7.937000e+03 8.156000e+03
## InsertSize_Mean 1.045370e+03 1.076300e+03
## InsertSize_Median 1.390000e+02 1.390000e+02
## GC_byPair_Mean 9.035000e+01 9.036000e+01
## GC_byPair_Median 9.100000e+01 9.100000e+01
## GC_byRead_Mean 4.518000e+01 4.518000e+01
## GC_byRead_Median 4.600000e+01 4.600000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Mean 5.000000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.800000e-01 4.800000e-01
## GeneBodyCoverage_UMQuartile_Median 4.600000e-01 4.600000e-01
## geneDiversityProfile_top1count 4.953000e+03 5.058000e+03
## geneDiversityProfile_top10count 2.183900e+04 2.297800e+04
## geneDiversityProfile_top100count 7.075400e+04 7.377900e+04
## geneDiversityProfile_top1000count 9.310400e+04 9.720300e+04
## geneDiversityProfile_top1pct 5.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.300000e-01 2.400000e-01
## geneDiversityProfile_top100pct 7.600000e-01 7.600000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.677130e+05 4.923220e+05
## total.aligned.rate 6.700000e-01 6.700000e-01
## aligned.and.pf.rate 5.800000e-01 5.800000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.299105e+01 3.988102e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.220706e+01 2.668091e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.706517e+01 2.069402e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.160334e+01 1.412402e+01
## overlapMismatchRate.byMinQual.noIndel_9 8.663822e+00 1.118073e+01
## overlapMismatchRate.byMinQual.noIndel_10 8.111957e+00 1.086590e+01
## overlapMismatchRate.byMinQual.noIndel_11 3.365845e+00 4.124608e+00
## overlapMismatchRate.byMinQual.noIndel_12 4.155307e+00 6.206333e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.460756e+00 2.677328e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.219022e+00 3.579952e+00
## overlapMismatchRate.byMinQual.noIndel_15 3.229429e+00 5.104511e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.780285e+00 3.018735e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.974005e+00 3.228251e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.404084e+00 2.386297e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.488323e+00 2.543424e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.101358e+00 1.841410e+00
## overlapMismatchRate.byMinQual.noIndel_21 6.473438e-01 8.085091e-01
## overlapMismatchRate.byMinQual.noIndel_22 5.701449e-01 7.130084e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.731921e-01 1.123500e+00
## overlapMismatchRate.byMinQual.noIndel_24 5.787417e-01 1.002802e+00
## overlapMismatchRate.byMinQual.noIndel_25 4.695230e-01 8.068752e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.720213e-01 4.103201e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.671375e-01 6.335834e-01
## overlapMismatchRate.byMinQual.noIndel_28 1.994012e-01 2.414724e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.298052e-01 3.914496e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.812069e-01 2.752462e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.594159e-01 2.471111e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.258948e-01 1.888533e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.478669e-01 2.034324e-01
## overlapMismatchRate.byMinQual.noIndel_34 9.253788e-02 1.258202e-01
## overlapMismatchRate.byMinQual.noIndel_35 9.240607e-02 9.062090e-02
## overlapMismatchRate.byMinQual.noIndel_36 7.998097e-02 8.723867e-02
## overlapMismatchRate.byMinQual.noIndel_37 7.291516e-02 7.565718e-02
## overlapMismatchRate.byMinQual.noIndel_38 6.574558e-02 8.617449e-02
## overlapMismatchRate.byMinQual.noIndel_39 6.022905e-02 7.803660e-02
## overlapMismatchRate.byMinQual.noIndel_40 5.037598e-02 5.911636e-02
## overlapMismatchRate.byMinQual.noIndel_41 3.801289e-02 3.967739e-02
## SAMP3_RG1 SAMP3_RG2
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.518560e+05 2.545200e+05
## TOTAL_READ_PAIRS 3.150030e+05 3.183890e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 6.314700e+04 6.386900e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.222500e+05 4.259900e+05
## BENCHMARK_MinutesOnSamIteration 1.830000e+00 1.720000e+00
## BENCHMARK_MinutesPerMillionReads 5.820000e+00 5.390000e+00
## BENCHMARK_MinutesPerMillionGoodReads 7.280000e+00 6.740000e+00
## ReadPairs_AmbigGene 4.810000e+02 4.510000e+02
## ReadPairs_UniqueGene 8.926000e+04 8.975700e+04
## ReadPairs_UniqueGene_CDS 6.808100e+04 6.865800e+04
## ReadPairs_UniqueGene_UTR 2.117900e+04 2.109900e+04
## ReadPairs_NoGene 1.621150e+05 1.643120e+05
## ReadPairs_NoGene_Intron 8.068000e+04 8.185300e+04
## ReadPairs_NoGene_OneKbFromGene 7.642000e+03 7.675000e+03
## ReadPairs_NoGene_TenKbFromGene 1.752700e+04 1.789600e+04
## ReadPairs_NoGene_MiddleOfNowhere 5.626600e+04 5.688800e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.390000e+02 5.250000e+02
## Genes_WithNonzeroCounts 5.250000e+02 5.390000e+02
## ReadPairs_ADV_NoGene_Intron 8.143500e+04 8.245900e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.068000e+04 8.185300e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.335380e+05 2.359790e+05
## InsertSizeCalc_lt_readLen 8.747000e+03 8.907000e+03
## InsertSizeCalc_eq_readLen 3.433000e+03 3.471000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.052390e+05 2.070020e+05
## InsertSizeCalc_ge_2xreadLen 1.611900e+04 1.659900e+04
## InsertSizeCalc_Drop_TOTAL 1.831800e+04 1.854100e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.102000e+03 1.146000e+03
## InsertSizeCalc_Drop_REASON3 1.721600e+04 1.739500e+04
## AVG_GC_R1 4.400000e-01 4.400000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.400000e-01 4.400000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.310000e+02 5.190000e+02
## AggregateGenes_WithReads 5.220000e+02 5.340000e+02
## SpliceLoci 9.250000e+03 9.233000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.877000e+03 2.827000e+03
## SpliceLoci_Known_FewReads 1.419000e+03 1.493000e+03
## SpliceLoci_Known_ManyReads 2.511000e+03 2.487000e+03
## SpliceLoci_Novel 2.443000e+03 2.426000e+03
## SpliceLoci_Novel_FewReads 2.203000e+03 2.194000e+03
## SpliceLoci_Novel_ManyReads 2.400000e+02 2.320000e+02
## SpliceEvents 5.497900e+04 5.525300e+04
## SpliceEvents_KnownLoci 5.009700e+04 5.044400e+04
## SpliceEvents_KnownLociWithFewReads 2.577000e+03 2.688000e+03
## SpliceEvents_KnownLociWithManyReads 4.752000e+04 4.775600e+04
## SpliceEvents_NovelLoci 4.882000e+03 4.809000e+03
## SpliceEvents_NovelLociWithFewReads 2.867000e+03 2.822000e+03
## SpliceEvents_NovelLociWithManyReads 2.015000e+03 1.987000e+03
## StrandTest_frFirstStrand 8.704200e+04 8.754800e+04
## StrandTest_frSecondStrand 2.373000e+03 2.401000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.090000e+02 4.030000e+02
## StrandTest_ambig_noGenes 1.620310e+05 1.641680e+05
## StrandTest_ambig_other 1.000000e+00 0.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.020000e+03 2.030000e+03
## insertionLoci 1.527000e+03 1.462000e+03
## deletionEventCt 3.071000e+03 3.062000e+03
## insertionEventCt 2.160000e+03 2.068000e+03
## highCoverageDeletionLoci 4.400000e+01 3.700000e+01
## highCoverageInsertionLoci 1.800000e+01 1.800000e+01
## OnTargetCount 1.865120e+05 1.883380e+05
## OffTargetCount 6.534400e+04 6.618200e+04
## OnTargetReadBases 5.492367e+07 5.535762e+07
## OnTargetReadPairBases 3.664593e+07 3.691307e+07
## AvgTargetReadDepth 1.019000e+01 1.025000e+01
## AvgTargetReadPairDepth 6.770000e+00 6.810000e+00
## TargetReadDepth 1.610000e+00 1.620000e+00
## TargetReadPairDepth 1.070000e+00 1.080000e+00
## OnTargetFraction 7.400000e-01 7.400000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.032000e+03 3.028000e+03
## PAIR_CONTAINS_INS 2.106000e+03 2.041000e+03
## PAIR_CONTAINS_INS_AND_DEL 5.900000e+01 5.900000e+01
## PAIR_CONTAINS_INDEL 5.079000e+03 5.010000e+03
## PAIR_CONTAINS_NO_INDEL 2.467770e+05 2.495100e+05
## READ_CONTAINS_DEL_R1 1.416000e+03 1.399000e+03
## READ_CONTAINS_INS_R1 1.007000e+03 1.014000e+03
## READ_CONTAINS_NO_INDEL_R1 2.494390e+05 2.521200e+05
## READ_CONTAINS_DEL_R2 1.616000e+03 1.629000e+03
## READ_CONTAINS_INS_R2 1.099000e+03 1.027000e+03
## READ_CONTAINS_NO_INDEL_R2 2.491720e+05 2.518850e+05
## NO_REF_BASE_SWAP_R1 2.053280e+05 2.069350e+05
## HAS_REF_BASE_SWAP_R1 4.652800e+04 4.758500e+04
## NO_REF_BASE_SWAP_R2 2.087310e+05 2.120140e+05
## HAS_REF_BASE_SWAP_R2 4.312500e+04 4.250600e+04
## PERFECT_REF_MATCH_PAIR 1.850840e+05 1.875830e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 1.642800e+04 1.691900e+04
## OM_overlap 2.354270e+05 2.376010e+05
## OM_BAD_OVERLAP 1.000000e+00 0.000000e+00
## OM_overlap_Match 2.065040e+05 2.086860e+05
## OM_overlap_mismatch 2.892300e+04 2.891500e+04
## NumReadsAtMaxReadLength_R1 2.518560e+05 2.545200e+05
## NumReadsAtMaxReadLength_R2 2.518560e+05 2.545200e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.400000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 3.930000e+03 3.980000e+03
## SpliceLoci_Novel_Covered 2.443000e+03 2.426000e+03
## SpliceLoci_Covered 6.373000e+03 6.406000e+03
## InsertSize_Mean 1.543820e+03 1.689790e+03
## InsertSize_Median 1.300000e+02 1.300000e+02
## GC_byPair_Mean 8.884000e+01 8.888000e+01
## GC_byPair_Median 9.000000e+01 9.000000e+01
## GC_byRead_Mean 4.442000e+01 4.444000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Median 4.600000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_UMQuartile_Median 5.100000e-01 4.900000e-01
## geneDiversityProfile_top1count 4.681000e+03 4.759000e+03
## geneDiversityProfile_top10count 1.970200e+04 2.005500e+04
## geneDiversityProfile_top100count 6.686300e+04 6.737100e+04
## geneDiversityProfile_top1000count 8.926000e+04 8.975700e+04
## geneDiversityProfile_top1pct 5.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.200000e-01 2.200000e-01
## geneDiversityProfile_top100pct 7.500000e-01 7.500000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.853970e+05 4.898590e+05
## total.aligned.rate 6.500000e-01 6.500000e-01
## aligned.and.pf.rate 5.200000e-01 5.200000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.225624e+01 3.201553e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.099892e+01 2.104969e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.710016e+01 1.705803e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.144952e+01 1.151535e+01
## overlapMismatchRate.byMinQual.noIndel_9 9.114265e+00 9.045896e+00
## overlapMismatchRate.byMinQual.noIndel_10 8.473001e+00 8.094264e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.257648e+00 3.243977e+00
## overlapMismatchRate.byMinQual.noIndel_12 3.654189e+00 3.873318e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.064757e+00 2.288450e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.054242e+00 2.198742e+00
## overlapMismatchRate.byMinQual.noIndel_15 2.865769e+00 2.779390e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.645810e+00 1.725545e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.841477e+00 1.893396e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.359671e+00 1.306887e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.500586e+00 1.448216e+00
## overlapMismatchRate.byMinQual.noIndel_20 9.650451e-01 9.718358e-01
## overlapMismatchRate.byMinQual.noIndel_21 5.687448e-01 5.815553e-01
## overlapMismatchRate.byMinQual.noIndel_22 4.687709e-01 4.820051e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.332314e-01 5.827487e-01
## overlapMismatchRate.byMinQual.noIndel_24 5.605948e-01 5.167167e-01
## overlapMismatchRate.byMinQual.noIndel_25 4.331094e-01 4.471308e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.629310e-01 2.369539e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.331252e-01 3.061129e-01
## overlapMismatchRate.byMinQual.noIndel_28 1.886618e-01 1.937121e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.269269e-01 2.248619e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.714596e-01 1.706558e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.630241e-01 1.535346e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.444281e-01 1.419020e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.348463e-01 1.311857e-01
## overlapMismatchRate.byMinQual.noIndel_34 9.825227e-02 9.288655e-02
## overlapMismatchRate.byMinQual.noIndel_35 9.191438e-02 9.209068e-02
## overlapMismatchRate.byMinQual.noIndel_36 9.096029e-02 8.658328e-02
## overlapMismatchRate.byMinQual.noIndel_37 7.186594e-02 6.981391e-02
## overlapMismatchRate.byMinQual.noIndel_38 7.530049e-02 6.119574e-02
## overlapMismatchRate.byMinQual.noIndel_39 8.012234e-02 6.160424e-02
## overlapMismatchRate.byMinQual.noIndel_40 6.326417e-02 4.921931e-02
## overlapMismatchRate.byMinQual.noIndel_41 5.499266e-02 4.745611e-02
## SAMP3_RG3 SAMP4_RG1
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.658820e+05 2.631800e+05
## TOTAL_READ_PAIRS 3.326180e+05 3.061770e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 6.673600e+04 4.299700e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.501700e+05 4.179710e+05
## BENCHMARK_MinutesOnSamIteration 1.970000e+00 2.130000e+00
## BENCHMARK_MinutesPerMillionReads 5.910000e+00 6.970000e+00
## BENCHMARK_MinutesPerMillionGoodReads 7.400000e+00 8.110000e+00
## ReadPairs_AmbigGene 5.170000e+02 5.010000e+02
## ReadPairs_UniqueGene 9.311500e+04 1.039150e+05
## ReadPairs_UniqueGene_CDS 7.127000e+04 8.125300e+04
## ReadPairs_UniqueGene_UTR 2.184500e+04 2.266200e+04
## ReadPairs_NoGene 1.722500e+05 1.587640e+05
## ReadPairs_NoGene_Intron 8.481900e+04 8.990900e+04
## ReadPairs_NoGene_OneKbFromGene 8.010000e+03 7.196000e+03
## ReadPairs_NoGene_TenKbFromGene 1.860900e+04 1.441700e+04
## ReadPairs_NoGene_MiddleOfNowhere 6.081200e+04 4.724200e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.260000e+02 5.520000e+02
## Genes_WithNonzeroCounts 5.380000e+02 5.120000e+02
## ReadPairs_ADV_NoGene_Intron 8.743100e+04 6.885500e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.481900e+04 8.990900e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.460160e+05 2.474210e+05
## InsertSizeCalc_lt_readLen 9.214000e+03 7.826000e+03
## InsertSizeCalc_eq_readLen 3.581000e+03 3.066000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.159310e+05 2.152300e+05
## InsertSizeCalc_ge_2xreadLen 1.729000e+04 2.129900e+04
## InsertSizeCalc_Drop_TOTAL 1.986600e+04 1.575900e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.096000e+03 1.125000e+03
## InsertSizeCalc_Drop_REASON3 1.877000e+04 1.463400e+04
## AVG_GC_R1 4.400000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.400000e-01 4.400000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.170000e+02 5.460000e+02
## AggregateGenes_WithReads 5.360000e+02 5.070000e+02
## SpliceLoci 9.370000e+03 9.202000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.793000e+03 2.955000e+03
## SpliceLoci_Known_FewReads 1.437000e+03 1.381000e+03
## SpliceLoci_Known_ManyReads 2.577000e+03 2.471000e+03
## SpliceLoci_Novel 2.563000e+03 2.395000e+03
## SpliceLoci_Novel_FewReads 2.302000e+03 2.096000e+03
## SpliceLoci_Novel_ManyReads 2.610000e+02 2.990000e+02
## SpliceEvents 5.780300e+04 6.325500e+04
## SpliceEvents_KnownLoci 5.257000e+04 5.765100e+04
## SpliceEvents_KnownLociWithFewReads 2.616000e+03 2.474000e+03
## SpliceEvents_KnownLociWithManyReads 4.995400e+04 5.517700e+04
## SpliceEvents_NovelLoci 5.233000e+03 5.604000e+03
## SpliceEvents_NovelLociWithFewReads 3.032000e+03 2.784000e+03
## SpliceEvents_NovelLociWithManyReads 2.201000e+03 2.820000e+03
## StrandTest_frFirstStrand 9.077700e+04 1.012910e+05
## StrandTest_frSecondStrand 2.490000e+03 1.947000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.730000e+02 3.740000e+02
## StrandTest_ambig_noGenes 1.721420e+05 1.595660e+05
## StrandTest_ambig_other 0.000000e+00 2.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.153000e+03 1.997000e+03
## insertionLoci 1.619000e+03 1.487000e+03
## deletionEventCt 3.289000e+03 3.184000e+03
## insertionEventCt 2.385000e+03 2.200000e+03
## highCoverageDeletionLoci 4.900000e+01 4.900000e+01
## highCoverageInsertionLoci 2.100000e+01 2.600000e+01
## OnTargetCount 1.953120e+05 2.076360e+05
## OffTargetCount 7.057000e+04 5.554400e+04
## OnTargetReadBases 5.744777e+07 6.260564e+07
## OnTargetReadPairBases 3.826292e+07 4.294696e+07
## AvgTargetReadDepth 1.070000e+01 1.132000e+01
## AvgTargetReadPairDepth 7.100000e+00 7.720000e+00
## TargetReadDepth 1.680000e+00 1.830000e+00
## TargetReadPairDepth 1.120000e+00 1.260000e+00
## OnTargetFraction 7.300000e-01 7.900000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.245000e+03 3.149000e+03
## PAIR_CONTAINS_INS 2.320000e+03 2.205000e+03
## PAIR_CONTAINS_INS_AND_DEL 6.700000e+01 5.800000e+01
## PAIR_CONTAINS_INDEL 5.498000e+03 5.296000e+03
## PAIR_CONTAINS_NO_INDEL 2.603840e+05 2.578840e+05
## READ_CONTAINS_DEL_R1 1.545000e+03 1.640000e+03
## READ_CONTAINS_INS_R1 1.069000e+03 1.164000e+03
## READ_CONTAINS_NO_INDEL_R1 2.632760e+05 2.603900e+05
## READ_CONTAINS_DEL_R2 1.700000e+03 1.509000e+03
## READ_CONTAINS_INS_R2 1.251000e+03 1.041000e+03
## READ_CONTAINS_NO_INDEL_R2 2.629590e+05 2.606430e+05
## NO_REF_BASE_SWAP_R1 2.223430e+05 2.124030e+05
## HAS_REF_BASE_SWAP_R1 4.353900e+04 5.077700e+04
## NO_REF_BASE_SWAP_R2 2.247710e+05 2.166560e+05
## HAS_REF_BASE_SWAP_R2 4.111100e+04 4.652400e+04
## PERFECT_REF_MATCH_PAIR 2.037640e+05 1.904130e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 1.762300e+04 2.168900e+04
## OM_overlap 2.482590e+05 2.414910e+05
## OM_BAD_OVERLAP 0.000000e+00 0.000000e+00
## OM_overlap_Match 2.315270e+05 2.118410e+05
## OM_overlap_mismatch 1.673200e+04 2.965000e+04
## NumReadsAtMaxReadLength_R1 2.658820e+05 2.631800e+05
## NumReadsAtMaxReadLength_R2 2.658820e+05 2.631800e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.500000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 4.014000e+03 3.852000e+03
## SpliceLoci_Novel_Covered 2.563000e+03 2.395000e+03
## SpliceLoci_Covered 6.577000e+03 6.247000e+03
## InsertSize_Mean 1.684430e+03 1.072580e+03
## InsertSize_Median 1.290000e+02 1.340000e+02
## GC_byPair_Mean 8.890000e+01 8.984000e+01
## GC_byPair_Median 9.000000e+01 9.100000e+01
## GC_byRead_Mean 4.445000e+01 4.492000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Median 4.600000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 5.000000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Median 4.900000e-01 4.900000e-01
## geneDiversityProfile_top1count 4.992000e+03 5.902000e+03
## geneDiversityProfile_top10count 2.056200e+04 2.706400e+04
## geneDiversityProfile_top100count 6.973200e+04 8.134100e+04
## geneDiversityProfile_top1000count 9.311500e+04 1.039150e+05
## geneDiversityProfile_top1pct 5.000000e-02 6.000000e-02
## geneDiversityProfile_top10pct 2.200000e-01 2.600000e-01
## geneDiversityProfile_top100pct 7.500000e-01 7.800000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 5.169060e+05 4.609680e+05
## total.aligned.rate 6.400000e-01 6.600000e-01
## aligned.and.pf.rate 5.100000e-01 5.700000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.830305e+01 3.257421e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.643283e+01 2.139577e+01
## overlapMismatchRate.byMinQual.noIndel_7 2.009661e+01 1.698230e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.374596e+01 1.167824e+01
## overlapMismatchRate.byMinQual.noIndel_9 1.044415e+01 9.267568e+00
## overlapMismatchRate.byMinQual.noIndel_10 1.014408e+01 8.063981e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.774721e+00 3.234880e+00
## overlapMismatchRate.byMinQual.noIndel_12 5.378210e+00 3.764211e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.690517e+00 2.374866e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.998944e+00 2.198144e+00
## overlapMismatchRate.byMinQual.noIndel_15 4.490682e+00 2.774718e+00
## overlapMismatchRate.byMinQual.noIndel_16 2.915525e+00 1.771276e+00
## overlapMismatchRate.byMinQual.noIndel_17 2.738467e+00 1.822474e+00
## overlapMismatchRate.byMinQual.noIndel_18 2.021411e+00 1.396294e+00
## overlapMismatchRate.byMinQual.noIndel_19 2.196290e+00 1.576250e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.599824e+00 9.659243e-01
## overlapMismatchRate.byMinQual.noIndel_21 7.202923e-01 5.964689e-01
## overlapMismatchRate.byMinQual.noIndel_22 5.908898e-01 4.934478e-01
## overlapMismatchRate.byMinQual.noIndel_23 8.543135e-01 6.362315e-01
## overlapMismatchRate.byMinQual.noIndel_24 8.039777e-01 5.432724e-01
## overlapMismatchRate.byMinQual.noIndel_25 7.324280e-01 4.774962e-01
## overlapMismatchRate.byMinQual.noIndel_26 3.000750e-01 2.337016e-01
## overlapMismatchRate.byMinQual.noIndel_27 5.451101e-01 3.448520e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.271940e-01 1.749487e-01
## overlapMismatchRate.byMinQual.noIndel_29 3.401640e-01 2.304491e-01
## overlapMismatchRate.byMinQual.noIndel_30 2.071036e-01 1.845587e-01
## overlapMismatchRate.byMinQual.noIndel_31 2.095871e-01 1.590424e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.567567e-01 1.372211e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.634592e-01 1.564364e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.144875e-01 9.938350e-02
## overlapMismatchRate.byMinQual.noIndel_35 9.014098e-02 1.026385e-01
## overlapMismatchRate.byMinQual.noIndel_36 8.615844e-02 8.820134e-02
## overlapMismatchRate.byMinQual.noIndel_37 7.206272e-02 8.321153e-02
## overlapMismatchRate.byMinQual.noIndel_38 6.409567e-02 8.438451e-02
## overlapMismatchRate.byMinQual.noIndel_39 7.529244e-02 8.230175e-02
## overlapMismatchRate.byMinQual.noIndel_40 6.090230e-02 6.654182e-02
## overlapMismatchRate.byMinQual.noIndel_41 5.840893e-02 5.425329e-02
## SAMP4_RG2 SAMP4_RG3
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.669010e+05 2.797240e+05
## TOTAL_READ_PAIRS 3.094840e+05 3.252610e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 4.258300e+04 4.553700e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.258080e+05 4.389930e+05
## BENCHMARK_MinutesOnSamIteration 1.080000e+00 2.300000e+00
## BENCHMARK_MinutesPerMillionReads 3.500000e+00 7.070000e+00
## BENCHMARK_MinutesPerMillionGoodReads 4.060000e+00 8.220000e+00
## ReadPairs_AmbigGene 5.170000e+02 5.930000e+02
## ReadPairs_UniqueGene 1.050460e+05 1.095570e+05
## ReadPairs_UniqueGene_CDS 8.214000e+04 8.561700e+04
## ReadPairs_UniqueGene_UTR 2.290600e+04 2.394000e+04
## ReadPairs_NoGene 1.613380e+05 1.695740e+05
## ReadPairs_NoGene_Intron 9.090200e+04 9.442800e+04
## ReadPairs_NoGene_OneKbFromGene 7.298000e+03 7.547000e+03
## ReadPairs_NoGene_TenKbFromGene 1.479700e+04 1.551600e+04
## ReadPairs_NoGene_MiddleOfNowhere 4.834100e+04 5.208300e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.490000e+02 5.330000e+02
## Genes_WithNonzeroCounts 5.150000e+02 5.310000e+02
## ReadPairs_ADV_NoGene_Intron 7.043600e+04 7.514600e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 9.090200e+04 9.442800e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.509470e+05 2.627580e+05
## InsertSizeCalc_lt_readLen 8.203000e+03 8.433000e+03
## InsertSizeCalc_eq_readLen 3.080000e+03 3.252000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.181050e+05 2.286330e+05
## InsertSizeCalc_ge_2xreadLen 2.155900e+04 2.244000e+04
## InsertSizeCalc_Drop_TOTAL 1.595400e+04 1.696600e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.203000e+03 1.166000e+03
## InsertSizeCalc_Drop_REASON3 1.475100e+04 1.580000e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.400000e-01 4.400000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.440000e+02 5.280000e+02
## AggregateGenes_WithReads 5.090000e+02 5.250000e+02
## SpliceLoci 9.298000e+03 9.456000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.972000e+03 2.966000e+03
## SpliceLoci_Known_FewReads 1.329000e+03 1.331000e+03
## SpliceLoci_Known_ManyReads 2.506000e+03 2.510000e+03
## SpliceLoci_Novel 2.491000e+03 2.649000e+03
## SpliceLoci_Novel_FewReads 2.229000e+03 2.361000e+03
## SpliceLoci_Novel_ManyReads 2.620000e+02 2.880000e+02
## SpliceEvents 6.366300e+04 6.643100e+04
## SpliceEvents_KnownLoci 5.814900e+04 6.043400e+04
## SpliceEvents_KnownLociWithFewReads 2.331000e+03 2.325000e+03
## SpliceEvents_KnownLociWithManyReads 5.581800e+04 5.810900e+04
## SpliceEvents_NovelLoci 5.514000e+03 5.997000e+03
## SpliceEvents_NovelLociWithFewReads 2.927000e+03 3.120000e+03
## SpliceEvents_NovelLociWithManyReads 2.587000e+03 2.877000e+03
## StrandTest_frFirstStrand 1.023350e+05 1.068390e+05
## StrandTest_frSecondStrand 2.169000e+03 2.156000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.280000e+02 4.130000e+02
## StrandTest_ambig_noGenes 1.619690e+05 1.703150e+05
## StrandTest_ambig_other 0.000000e+00 1.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 1.979000e+03 2.222000e+03
## insertionLoci 1.504000e+03 1.573000e+03
## deletionEventCt 3.137000e+03 3.423000e+03
## insertionEventCt 2.213000e+03 2.313000e+03
## highCoverageDeletionLoci 4.600000e+01 4.900000e+01
## highCoverageInsertionLoci 2.600000e+01 2.600000e+01
## OnTargetCount 2.101200e+05 2.185590e+05
## OffTargetCount 5.678100e+04 6.116500e+04
## OnTargetReadBases 6.342145e+07 6.597353e+07
## OnTargetReadPairBases 4.351435e+07 4.517786e+07
## AvgTargetReadDepth 1.143000e+01 1.190000e+01
## AvgTargetReadPairDepth 7.810000e+00 8.100000e+00
## TargetReadDepth 1.860000e+00 1.930000e+00
## TargetReadPairDepth 1.270000e+00 1.320000e+00
## OnTargetFraction 7.900000e-01 7.800000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.078000e+03 3.373000e+03
## PAIR_CONTAINS_INS 2.216000e+03 2.341000e+03
## PAIR_CONTAINS_INS_AND_DEL 6.200000e+01 5.900000e+01
## PAIR_CONTAINS_INDEL 5.232000e+03 5.655000e+03
## PAIR_CONTAINS_NO_INDEL 2.616690e+05 2.740690e+05
## READ_CONTAINS_DEL_R1 1.582000e+03 1.734000e+03
## READ_CONTAINS_INS_R1 1.175000e+03 1.265000e+03
## READ_CONTAINS_NO_INDEL_R1 2.641520e+05 2.767380e+05
## READ_CONTAINS_DEL_R2 1.496000e+03 1.639000e+03
## READ_CONTAINS_INS_R2 1.041000e+03 1.076000e+03
## READ_CONTAINS_NO_INDEL_R2 2.643840e+05 2.770290e+05
## NO_REF_BASE_SWAP_R1 2.145740e+05 2.320880e+05
## HAS_REF_BASE_SWAP_R1 5.232700e+04 4.763600e+04
## NO_REF_BASE_SWAP_R2 2.203610e+05 2.348070e+05
## HAS_REF_BASE_SWAP_R2 4.654000e+04 4.491700e+04
## PERFECT_REF_MATCH_PAIR 1.932520e+05 2.111840e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 2.198500e+04 2.287600e+04
## OM_overlap 2.449160e+05 2.568480e+05
## OM_BAD_OVERLAP 0.000000e+00 0.000000e+00
## OM_overlap_Match 2.145730e+05 2.396110e+05
## OM_overlap_mismatch 3.034300e+04 1.723700e+04
## NumReadsAtMaxReadLength_R1 2.669010e+05 2.797240e+05
## NumReadsAtMaxReadLength_R2 2.669010e+05 2.797240e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.400000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 3.835000e+03 3.841000e+03
## SpliceLoci_Novel_Covered 2.491000e+03 2.649000e+03
## SpliceLoci_Covered 6.326000e+03 6.490000e+03
## InsertSize_Mean 1.018440e+03 1.030180e+03
## InsertSize_Median 1.340000e+02 1.330000e+02
## GC_byPair_Mean 8.982000e+01 8.980000e+01
## GC_byPair_Median 9.100000e+01 9.100000e+01
## GC_byRead_Mean 4.491000e+01 4.490000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.100000e-01 5.100000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 5.000000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Median 4.900000e-01 4.900000e-01
## geneDiversityProfile_top1count 6.063000e+03 6.255000e+03
## geneDiversityProfile_top10count 2.718000e+04 2.857700e+04
## geneDiversityProfile_top100count 8.215400e+04 8.590800e+04
## geneDiversityProfile_top1000count 1.050460e+05 1.095570e+05
## geneDiversityProfile_top1pct 6.000000e-02 6.000000e-02
## geneDiversityProfile_top10pct 2.600000e-01 2.600000e-01
## geneDiversityProfile_top100pct 7.800000e-01 7.800000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.683910e+05 4.845300e+05
## total.aligned.rate 6.600000e-01 6.700000e-01
## aligned.and.pf.rate 5.700000e-01 5.800000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.262940e+01 3.860062e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.136309e+01 2.633752e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.697203e+01 1.966710e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.127848e+01 1.364926e+01
## overlapMismatchRate.byMinQual.noIndel_9 8.788208e+00 1.063392e+01
## overlapMismatchRate.byMinQual.noIndel_10 7.962989e+00 9.609433e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.332282e+00 3.615365e+00
## overlapMismatchRate.byMinQual.noIndel_12 3.775219e+00 5.591922e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.181556e+00 2.724392e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.227077e+00 3.275715e+00
## overlapMismatchRate.byMinQual.noIndel_15 3.073105e+00 4.516154e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.723190e+00 2.587646e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.790525e+00 2.653894e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.384148e+00 2.111185e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.463928e+00 2.173228e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.020005e+00 1.519505e+00
## overlapMismatchRate.byMinQual.noIndel_21 5.969224e-01 7.999187e-01
## overlapMismatchRate.byMinQual.noIndel_22 5.026465e-01 6.693109e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.349834e-01 8.467333e-01
## overlapMismatchRate.byMinQual.noIndel_24 4.947042e-01 8.199029e-01
## overlapMismatchRate.byMinQual.noIndel_25 4.434850e-01 6.886232e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.605983e-01 3.270828e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.335397e-01 5.847953e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.342538e-01 2.397171e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.202885e-01 3.391084e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.765804e-01 2.185427e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.621566e-01 2.393902e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.341576e-01 1.678818e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.586693e-01 1.802320e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.012970e-01 1.088521e-01
## overlapMismatchRate.byMinQual.noIndel_35 9.811153e-02 9.047736e-02
## overlapMismatchRate.byMinQual.noIndel_36 9.358424e-02 9.692960e-02
## overlapMismatchRate.byMinQual.noIndel_37 8.524873e-02 8.654232e-02
## overlapMismatchRate.byMinQual.noIndel_38 8.276291e-02 8.117577e-02
## overlapMismatchRate.byMinQual.noIndel_39 8.680334e-02 8.572023e-02
## overlapMismatchRate.byMinQual.noIndel_40 6.916326e-02 7.350703e-02
## overlapMismatchRate.byMinQual.noIndel_41 5.656160e-02 6.766820e-02
## SAMP5_RG1 SAMP5_RG2
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.888230e+05 2.917480e+05
## TOTAL_READ_PAIRS 3.314260e+05 3.351250e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 4.260300e+04 4.337700e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.272810e+05 4.316240e+05
## BENCHMARK_MinutesOnSamIteration 2.350000e+00 1.650000e+00
## BENCHMARK_MinutesPerMillionReads 7.090000e+00 4.920000e+00
## BENCHMARK_MinutesPerMillionGoodReads 8.140000e+00 5.660000e+00
## ReadPairs_AmbigGene 5.490000e+02 5.450000e+02
## ReadPairs_UniqueGene 1.142830e+05 1.151320e+05
## ReadPairs_UniqueGene_CDS 8.920600e+04 8.971700e+04
## ReadPairs_UniqueGene_UTR 2.507700e+04 2.541500e+04
## ReadPairs_NoGene 1.739910e+05 1.760710e+05
## ReadPairs_NoGene_Intron 1.002450e+05 1.010430e+05
## ReadPairs_NoGene_OneKbFromGene 7.534000e+03 7.641000e+03
## ReadPairs_NoGene_TenKbFromGene 1.518800e+04 1.543500e+04
## ReadPairs_NoGene_MiddleOfNowhere 5.102400e+04 5.195200e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.400000e+02 5.440000e+02
## Genes_WithNonzeroCounts 5.240000e+02 5.200000e+02
## ReadPairs_ADV_NoGene_Intron 7.374600e+04 7.502800e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 1.002450e+05 1.010430e+05
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.717220e+05 2.744100e+05
## InsertSizeCalc_lt_readLen 8.506000e+03 8.596000e+03
## InsertSizeCalc_eq_readLen 3.375000e+03 3.509000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.391990e+05 2.415830e+05
## InsertSizeCalc_ge_2xreadLen 2.064200e+04 2.072200e+04
## InsertSizeCalc_Drop_TOTAL 1.710100e+04 1.733800e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.399000e+03 1.296000e+03
## InsertSizeCalc_Drop_REASON3 1.570200e+04 1.604200e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.400000e-01 4.400000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.330000e+02 5.370000e+02
## AggregateGenes_WithReads 5.200000e+02 5.160000e+02
## SpliceLoci 9.994000e+03 1.007200e+04
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.830000e+03 2.871000e+03
## SpliceLoci_Known_FewReads 1.340000e+03 1.308000e+03
## SpliceLoci_Known_ManyReads 2.637000e+03 2.628000e+03
## SpliceLoci_Novel 3.187000e+03 3.265000e+03
## SpliceLoci_Novel_FewReads 2.847000e+03 2.905000e+03
## SpliceLoci_Novel_ManyReads 3.400000e+02 3.600000e+02
## SpliceEvents 6.953100e+04 7.023600e+04
## SpliceEvents_KnownLoci 6.235600e+04 6.296000e+04
## SpliceEvents_KnownLociWithFewReads 2.418000e+03 2.280000e+03
## SpliceEvents_KnownLociWithManyReads 5.993800e+04 6.068000e+04
## SpliceEvents_NovelLoci 7.175000e+03 7.276000e+03
## SpliceEvents_NovelLociWithFewReads 3.762000e+03 3.827000e+03
## SpliceEvents_NovelLociWithManyReads 3.413000e+03 3.449000e+03
## StrandTest_frFirstStrand 1.113490e+05 1.121550e+05
## StrandTest_frSecondStrand 3.529000e+03 3.563000e+03
## StrandTest_ambig_genesFountOnBothStrands 4.870000e+02 5.220000e+02
## StrandTest_ambig_noGenes 1.734580e+05 1.755080e+05
## StrandTest_ambig_other 0.000000e+00 0.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.276000e+03 2.268000e+03
## insertionLoci 1.686000e+03 1.705000e+03
## deletionEventCt 3.631000e+03 3.701000e+03
## insertionEventCt 2.543000e+03 2.570000e+03
## highCoverageDeletionLoci 5.000000e+01 5.700000e+01
## highCoverageInsertionLoci 2.700000e+01 2.600000e+01
## OnTargetCount 2.303000e+05 2.319990e+05
## OffTargetCount 5.852300e+04 5.974900e+04
## OnTargetReadBases 6.961840e+07 7.012839e+07
## OnTargetReadPairBases 4.758056e+07 4.787852e+07
## AvgTargetReadDepth 1.248000e+01 1.260000e+01
## AvgTargetReadPairDepth 8.480000e+00 8.560000e+00
## TargetReadDepth 2.040000e+00 2.050000e+00
## TargetReadPairDepth 1.390000e+00 1.400000e+00
## OnTargetFraction 8.000000e-01 8.000000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 3.589000e+03 3.634000e+03
## PAIR_CONTAINS_INS 2.599000e+03 2.551000e+03
## PAIR_CONTAINS_INS_AND_DEL 6.500000e+01 7.900000e+01
## PAIR_CONTAINS_INDEL 6.123000e+03 6.106000e+03
## PAIR_CONTAINS_NO_INDEL 2.827000e+05 2.856420e+05
## READ_CONTAINS_DEL_R1 1.848000e+03 1.894000e+03
## READ_CONTAINS_INS_R1 1.381000e+03 1.361000e+03
## READ_CONTAINS_NO_INDEL_R1 2.856100e+05 2.885080e+05
## READ_CONTAINS_DEL_R2 1.741000e+03 1.740000e+03
## READ_CONTAINS_INS_R2 1.218000e+03 1.190000e+03
## READ_CONTAINS_NO_INDEL_R2 2.858790e+05 2.888480e+05
## NO_REF_BASE_SWAP_R1 2.312540e+05 2.333100e+05
## HAS_REF_BASE_SWAP_R1 5.756900e+04 5.843800e+04
## NO_REF_BASE_SWAP_R2 2.356020e+05 2.392350e+05
## HAS_REF_BASE_SWAP_R2 5.322100e+04 5.251300e+04
## PERFECT_REF_MATCH_PAIR 2.062400e+05 2.091810e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 2.113200e+04 2.122700e+04
## OM_overlap 2.676910e+05 2.705190e+05
## OM_BAD_OVERLAP 0.000000e+00 2.000000e+00
## OM_overlap_Match 2.332880e+05 2.359300e+05
## OM_overlap_mismatch 3.440300e+04 3.458900e+04
## NumReadsAtMaxReadLength_R1 2.888230e+05 2.917480e+05
## NumReadsAtMaxReadLength_R2 2.888230e+05 2.917480e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.400000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 3.977000e+03 3.936000e+03
## SpliceLoci_Novel_Covered 3.187000e+03 3.265000e+03
## SpliceLoci_Covered 7.164000e+03 7.201000e+03
## InsertSize_Mean 9.018900e+02 9.357500e+02
## InsertSize_Median 1.330000e+02 1.330000e+02
## GC_byPair_Mean 8.974000e+01 8.968000e+01
## GC_byPair_Median 9.100000e+01 9.000000e+01
## GC_byRead_Mean 4.487000e+01 4.484000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.100000e-01 5.100000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.900000e-01 4.800000e-01
## GeneBodyCoverage_UMQuartile_Median 4.900000e-01 4.900000e-01
## geneDiversityProfile_top1count 6.065000e+03 6.076000e+03
## geneDiversityProfile_top10count 2.963600e+04 2.997100e+04
## geneDiversityProfile_top100count 8.836300e+04 8.898500e+04
## geneDiversityProfile_top1000count 1.142830e+05 1.151320e+05
## geneDiversityProfile_top1pct 5.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.600000e-01 2.600000e-01
## geneDiversityProfile_top100pct 7.700000e-01 7.700000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.698840e+05 4.750010e+05
## total.aligned.rate 7.100000e-01 7.100000e-01
## aligned.and.pf.rate 6.100000e-01 6.100000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.237356e+01 3.258738e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.110273e+01 2.093146e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.728148e+01 1.695991e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.161373e+01 1.137558e+01
## overlapMismatchRate.byMinQual.noIndel_9 9.369515e+00 8.739434e+00
## overlapMismatchRate.byMinQual.noIndel_10 8.344810e+00 8.105642e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.295523e+00 3.177739e+00
## overlapMismatchRate.byMinQual.noIndel_12 3.985182e+00 3.881235e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.179336e+00 2.198259e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.383364e+00 2.175828e+00
## overlapMismatchRate.byMinQual.noIndel_15 3.095432e+00 2.979654e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.730058e+00 1.729859e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.965620e+00 1.906107e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.417775e+00 1.372857e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.585291e+00 1.486654e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.068491e+00 1.018739e+00
## overlapMismatchRate.byMinQual.noIndel_21 6.276114e-01 6.090155e-01
## overlapMismatchRate.byMinQual.noIndel_22 5.564362e-01 4.821754e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.570118e-01 6.317185e-01
## overlapMismatchRate.byMinQual.noIndel_24 5.657878e-01 5.717311e-01
## overlapMismatchRate.byMinQual.noIndel_25 5.046198e-01 4.615486e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.647930e-01 2.650146e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.610438e-01 3.556254e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.090238e-01 2.186849e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.589644e-01 2.505633e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.799837e-01 1.875589e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.881430e-01 1.721413e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.543890e-01 1.719116e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.538494e-01 1.634595e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.014356e-01 1.139418e-01
## overlapMismatchRate.byMinQual.noIndel_35 9.578532e-02 1.089500e-01
## overlapMismatchRate.byMinQual.noIndel_36 9.454551e-02 9.777256e-02
## overlapMismatchRate.byMinQual.noIndel_37 8.577454e-02 7.620685e-02
## overlapMismatchRate.byMinQual.noIndel_38 7.625705e-02 8.269647e-02
## overlapMismatchRate.byMinQual.noIndel_39 7.359854e-02 8.294161e-02
## overlapMismatchRate.byMinQual.noIndel_40 6.345966e-02 6.038842e-02
## overlapMismatchRate.byMinQual.noIndel_41 5.196649e-02 5.825882e-02
## SAMP5_RG3 SAMP6_RG1
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 3.277820e+05 2.343570e+05
## TOTAL_READ_PAIRS 3.766730e+05 2.877940e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 4.889100e+04 5.343700e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.453220e+05 3.989920e+05
## BENCHMARK_MinutesOnSamIteration 2.350000e+00 1.730000e+00
## BENCHMARK_MinutesPerMillionReads 6.240000e+00 6.020000e+00
## BENCHMARK_MinutesPerMillionGoodReads 7.170000e+00 7.400000e+00
## ReadPairs_AmbigGene 6.260000e+02 5.540000e+02
## ReadPairs_UniqueGene 1.291890e+05 8.915800e+04
## ReadPairs_UniqueGene_CDS 1.009970e+05 6.948300e+04
## ReadPairs_UniqueGene_UTR 2.819200e+04 1.967500e+04
## ReadPairs_NoGene 1.979670e+05 1.446450e+05
## ReadPairs_NoGene_Intron 1.127740e+05 8.125700e+04
## ReadPairs_NoGene_OneKbFromGene 8.478000e+03 6.292000e+03
## ReadPairs_NoGene_TenKbFromGene 1.708600e+04 1.308900e+04
## ReadPairs_NoGene_MiddleOfNowhere 5.962900e+04 4.400700e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.270000e+02 5.220000e+02
## Genes_WithNonzeroCounts 5.370000e+02 5.420000e+02
## ReadPairs_ADV_NoGene_Intron 8.519300e+04 6.338800e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 1.127740e+05 8.125700e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 3.078780e+05 2.171540e+05
## InsertSizeCalc_lt_readLen 9.726000e+03 7.822000e+03
## InsertSizeCalc_eq_readLen 3.913000e+03 3.137000e+03
## InsertSizeCalc_readLen_to_2xreadLen 2.710640e+05 1.904690e+05
## InsertSizeCalc_ge_2xreadLen 2.317500e+04 1.572600e+04
## InsertSizeCalc_Drop_TOTAL 1.990400e+04 1.720300e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.485000e+03 1.134000e+03
## InsertSizeCalc_Drop_REASON3 1.841900e+04 1.606900e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.400000e-01 4.500000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.170000e+02 5.150000e+02
## AggregateGenes_WithReads 5.360000e+02 5.380000e+02
## SpliceLoci 1.038300e+04 9.492000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.746000e+03 2.765000e+03
## SpliceLoci_Known_FewReads 1.293000e+03 1.565000e+03
## SpliceLoci_Known_ManyReads 2.768000e+03 2.477000e+03
## SpliceLoci_Novel 3.576000e+03 2.685000e+03
## SpliceLoci_Novel_FewReads 3.145000e+03 2.459000e+03
## SpliceLoci_Novel_ManyReads 4.310000e+02 2.260000e+02
## SpliceEvents 7.927500e+04 5.302300e+04
## SpliceEvents_KnownLoci 7.079800e+04 4.774100e+04
## SpliceEvents_KnownLociWithFewReads 2.290000e+03 2.799000e+03
## SpliceEvents_KnownLociWithManyReads 6.850800e+04 4.494200e+04
## SpliceEvents_NovelLoci 8.477000e+03 5.282000e+03
## SpliceEvents_NovelLociWithFewReads 4.196000e+03 3.172000e+03
## SpliceEvents_NovelLociWithManyReads 4.281000e+03 2.110000e+03
## StrandTest_frFirstStrand 1.258780e+05 8.716400e+04
## StrandTest_frSecondStrand 3.960000e+03 2.281000e+03
## StrandTest_ambig_genesFountOnBothStrands 5.670000e+02 3.590000e+02
## StrandTest_ambig_noGenes 1.973770e+05 1.445530e+05
## StrandTest_ambig_other 0.000000e+00 0.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.557000e+03 1.967000e+03
## insertionLoci 1.932000e+03 1.547000e+03
## deletionEventCt 4.116000e+03 2.801000e+03
## insertionEventCt 3.023000e+03 2.192000e+03
## highCoverageDeletionLoci 6.300000e+01 3.400000e+01
## highCoverageInsertionLoci 3.400000e+01 1.800000e+01
## OnTargetCount 2.595520e+05 1.820500e+05
## OffTargetCount 6.823000e+04 5.230700e+04
## OnTargetReadBases 7.855184e+07 5.431700e+07
## OnTargetReadPairBases 5.357887e+07 3.639897e+07
## AvgTargetReadDepth 1.412000e+01 9.700000e+00
## AvgTargetReadPairDepth 9.590000e+00 6.480000e+00
## TargetReadDepth 2.300000e+00 1.590000e+00
## TargetReadPairDepth 1.570000e+00 1.070000e+00
## OnTargetFraction 7.900000e-01 7.800000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 4.056000e+03 2.764000e+03
## PAIR_CONTAINS_INS 3.074000e+03 2.109000e+03
## PAIR_CONTAINS_INS_AND_DEL 8.600000e+01 6.300000e+01
## PAIR_CONTAINS_INDEL 7.044000e+03 4.810000e+03
## PAIR_CONTAINS_NO_INDEL 3.207380e+05 2.295470e+05
## READ_CONTAINS_DEL_R1 2.046000e+03 1.315000e+03
## READ_CONTAINS_INS_R1 1.588000e+03 1.004000e+03
## READ_CONTAINS_NO_INDEL_R1 3.241610e+05 2.320490e+05
## READ_CONTAINS_DEL_R2 2.010000e+03 1.449000e+03
## READ_CONTAINS_INS_R2 1.486000e+03 1.105000e+03
## READ_CONTAINS_NO_INDEL_R2 3.243180e+05 2.318250e+05
## NO_REF_BASE_SWAP_R1 2.703910e+05 1.885430e+05
## HAS_REF_BASE_SWAP_R1 5.739100e+04 4.581400e+04
## NO_REF_BASE_SWAP_R2 2.731670e+05 1.921280e+05
## HAS_REF_BASE_SWAP_R2 5.461500e+04 4.222900e+04
## PERFECT_REF_MATCH_PAIR 2.452710e+05 1.691420e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 2.366200e+04 1.606400e+04
## OM_overlap 3.041200e+05 2.182930e+05
## OM_BAD_OVERLAP 0.000000e+00 0.000000e+00
## OM_overlap_Match 2.829670e+05 1.907310e+05
## OM_overlap_mismatch 2.115300e+04 2.756200e+04
## NumReadsAtMaxReadLength_R1 3.277820e+05 2.343570e+05
## NumReadsAtMaxReadLength_R2 3.277820e+05 2.343570e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.400000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 4.061000e+03 4.042000e+03
## SpliceLoci_Novel_Covered 3.576000e+03 2.685000e+03
## SpliceLoci_Covered 7.637000e+03 6.727000e+03
## InsertSize_Mean 9.612000e+02 1.445930e+03
## InsertSize_Median 1.330000e+02 1.300000e+02
## GC_byPair_Mean 8.977000e+01 9.012000e+01
## GC_byPair_Median 9.100000e+01 9.100000e+01
## GC_byRead_Mean 4.489000e+01 4.506000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.100000e-01 5.100000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 5.000000e-01 4.800000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.600000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.800000e-01 4.800000e-01
## GeneBodyCoverage_UMQuartile_Median 4.600000e-01 4.900000e-01
## geneDiversityProfile_top1count 6.808000e+03 4.498000e+03
## geneDiversityProfile_top10count 3.353500e+04 2.240700e+04
## geneDiversityProfile_top100count 9.979300e+04 6.651300e+04
## geneDiversityProfile_top1000count 1.291890e+05 8.915800e+04
## geneDiversityProfile_top1pct 5.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.600000e-01 2.500000e-01
## geneDiversityProfile_top100pct 7.700000e-01 7.500000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.942130e+05 4.524290e+05
## total.aligned.rate 7.600000e-01 6.400000e-01
## aligned.and.pf.rate 6.600000e-01 5.200000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.869531e+01 3.222952e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.566322e+01 2.105626e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.991116e+01 1.721811e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.354882e+01 1.148216e+01
## overlapMismatchRate.byMinQual.noIndel_9 1.030905e+01 8.888497e+00
## overlapMismatchRate.byMinQual.noIndel_10 1.013746e+01 8.055393e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.628555e+00 3.467795e+00
## overlapMismatchRate.byMinQual.noIndel_12 5.833190e+00 4.033204e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.438315e+00 2.308660e+00
## overlapMismatchRate.byMinQual.noIndel_14 3.030559e+00 2.151036e+00
## overlapMismatchRate.byMinQual.noIndel_15 4.470728e+00 2.831265e+00
## overlapMismatchRate.byMinQual.noIndel_16 2.686567e+00 1.733988e+00
## overlapMismatchRate.byMinQual.noIndel_17 2.815290e+00 1.908171e+00
## overlapMismatchRate.byMinQual.noIndel_18 2.151900e+00 1.423102e+00
## overlapMismatchRate.byMinQual.noIndel_19 2.359037e+00 1.449040e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.532032e+00 9.946323e-01
## overlapMismatchRate.byMinQual.noIndel_21 8.367154e-01 6.465888e-01
## overlapMismatchRate.byMinQual.noIndel_22 6.284727e-01 5.510234e-01
## overlapMismatchRate.byMinQual.noIndel_23 9.147663e-01 6.328348e-01
## overlapMismatchRate.byMinQual.noIndel_24 8.862247e-01 5.552568e-01
## overlapMismatchRate.byMinQual.noIndel_25 7.990142e-01 4.533445e-01
## overlapMismatchRate.byMinQual.noIndel_26 3.550670e-01 2.676925e-01
## overlapMismatchRate.byMinQual.noIndel_27 6.191496e-01 3.445236e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.517764e-01 2.056906e-01
## overlapMismatchRate.byMinQual.noIndel_29 3.844340e-01 2.389338e-01
## overlapMismatchRate.byMinQual.noIndel_30 2.483635e-01 1.912630e-01
## overlapMismatchRate.byMinQual.noIndel_31 2.585389e-01 1.744303e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.893782e-01 1.557588e-01
## overlapMismatchRate.byMinQual.noIndel_33 2.141848e-01 1.615321e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.233042e-01 1.154573e-01
## overlapMismatchRate.byMinQual.noIndel_35 9.949074e-02 1.041292e-01
## overlapMismatchRate.byMinQual.noIndel_36 9.694287e-02 1.168680e-01
## overlapMismatchRate.byMinQual.noIndel_37 8.881572e-02 1.013008e-01
## overlapMismatchRate.byMinQual.noIndel_38 9.768257e-02 1.029252e-01
## overlapMismatchRate.byMinQual.noIndel_39 8.669469e-02 1.035087e-01
## overlapMismatchRate.byMinQual.noIndel_40 7.582806e-02 7.948856e-02
## overlapMismatchRate.byMinQual.noIndel_41 6.369951e-02 6.895130e-02
## SAMP6_RG2 SAMP6_RG3
## Stranded_Rule_Code 1.000000e+00 1.000000e+00
## READ_PAIR_OK 2.371930e+05 2.481170e+05
## TOTAL_READ_PAIRS 2.912610e+05 3.053830e+05
## DROPPED_NOT_PROPER_PAIR 0.000000e+00 0.000000e+00
## DROPPED_READ_FAILS_VENDOR_QC 0.000000e+00 0.000000e+00
## DROPPED_MARKED_NOT_VALID 0.000000e+00 0.000000e+00
## DROPPED_CHROMS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_PAIR_STRANDS_MISMATCH 0.000000e+00 0.000000e+00
## DROPPED_IGNORED_CHROMOSOME 0.000000e+00 0.000000e+00
## DROPPED_NOT_UNIQUE_ALIGNMENT 5.406800e+04 5.726600e+04
## DROPPED_NO_ALN_BLOCKS 0.000000e+00 0.000000e+00
## DROPPED_NOT_MARKED_RG -1.000000e+00 -1.000000e+00
## KEPT_NOT_UNIQUE_ALIGNMENT 0.000000e+00 0.000000e+00
## minObservedReadLength 1.010000e+02 1.010000e+02
## maxObservedReadLength 1.010000e+02 1.010000e+02
## maxLegalPhredScore 4.100000e+01 4.100000e+01
## IS_SINGLE_END 0.000000e+00 0.000000e+00
## PREALIGNMENT_READ_CT 4.047420e+05 4.204850e+05
## BENCHMARK_MinutesOnSamIteration 1.200000e+00 1.770000e+00
## BENCHMARK_MinutesPerMillionReads 4.120000e+00 5.790000e+00
## BENCHMARK_MinutesPerMillionGoodReads 5.060000e+00 7.120000e+00
## ReadPairs_AmbigGene 5.830000e+02 6.430000e+02
## ReadPairs_UniqueGene 9.052600e+04 9.458200e+04
## ReadPairs_UniqueGene_CDS 7.087700e+04 7.391200e+04
## ReadPairs_UniqueGene_UTR 1.964900e+04 2.067000e+04
## ReadPairs_NoGene 1.460840e+05 1.528920e+05
## ReadPairs_NoGene_Intron 8.201200e+04 8.514400e+04
## ReadPairs_NoGene_OneKbFromGene 6.094000e+03 6.365000e+03
## ReadPairs_NoGene_TenKbFromGene 1.334000e+04 1.391900e+04
## ReadPairs_NoGene_MiddleOfNowhere 4.463800e+04 4.746400e+04
## Genes_Total 1.064000e+03 1.064000e+03
## Genes_WithZeroCounts 5.230000e+02 5.180000e+02
## Genes_WithNonzeroCounts 5.410000e+02 5.460000e+02
## ReadPairs_ADV_NoGene_Intron 6.407200e+04 6.774800e+04
## ReadPairs_ADV_NoGene_OneKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_TenKbFromGene 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_MiddleOfNowhere 8.201200e+04 8.514400e+04
## ReadPairs_ADV_NoGene_swappedStrand 0.000000e+00 0.000000e+00
## ReadPairs_ADV_NoGene_swappedStrandIntron 0.000000e+00 0.000000e+00
## InsertSizeCalc_Kept 2.197080e+05 2.294500e+05
## InsertSizeCalc_lt_readLen 8.214000e+03 8.694000e+03
## InsertSizeCalc_eq_readLen 3.182000e+03 3.326000e+03
## InsertSizeCalc_readLen_to_2xreadLen 1.923720e+05 2.006110e+05
## InsertSizeCalc_ge_2xreadLen 1.594000e+04 1.681900e+04
## InsertSizeCalc_Drop_TOTAL 1.748500e+04 1.866700e+04
## InsertSizeCalc_Drop_REASON1 0.000000e+00 0.000000e+00
## InsertSizeCalc_Drop_REASON2 1.109000e+03 1.133000e+03
## InsertSizeCalc_Drop_REASON3 1.637600e+04 1.753400e+04
## AVG_GC_R1 4.500000e-01 4.500000e-01
## AVG_GC_R2 4.400000e-01 4.400000e-01
## AVG_GC 4.500000e-01 4.500000e-01
## AggregateGenes 1.053000e+03 1.053000e+03
## AggregateGenes_NoReads 5.160000e+02 5.110000e+02
## AggregateGenes_WithReads 5.370000e+02 5.420000e+02
## SpliceLoci 9.571000e+03 9.667000e+03
## SpliceLoci_Known 6.807000e+03 6.807000e+03
## SpliceLoci_Known_NoReads 2.778000e+03 2.740000e+03
## SpliceLoci_Known_FewReads 1.595000e+03 1.555000e+03
## SpliceLoci_Known_ManyReads 2.434000e+03 2.512000e+03
## SpliceLoci_Novel 2.764000e+03 2.860000e+03
## SpliceLoci_Novel_FewReads 2.520000e+03 2.597000e+03
## SpliceLoci_Novel_ManyReads 2.440000e+02 2.630000e+02
## SpliceEvents 5.456900e+04 5.627400e+04
## SpliceEvents_KnownLoci 4.919600e+04 5.070400e+04
## SpliceEvents_KnownLociWithFewReads 2.935000e+03 2.854000e+03
## SpliceEvents_KnownLociWithManyReads 4.626100e+04 4.785000e+04
## SpliceEvents_NovelLoci 5.373000e+03 5.570000e+03
## SpliceEvents_NovelLociWithFewReads 3.218000e+03 3.353000e+03
## SpliceEvents_NovelLociWithManyReads 2.155000e+03 2.217000e+03
## StrandTest_frFirstStrand 8.848100e+04 9.242600e+04
## StrandTest_frSecondStrand 2.408000e+03 2.429000e+03
## StrandTest_ambig_genesFountOnBothStrands 3.700000e+02 4.250000e+02
## StrandTest_ambig_noGenes 1.459340e+05 1.528370e+05
## StrandTest_ambig_other 0.000000e+00 0.000000e+00
## StrandTest_STRANDEDNESS_MATCHES_INFERRED 1.000000e+00 1.000000e+00
## NumberOfChromosomesCovered 3.000000e+00 3.000000e+00
## deletionLoci 2.069000e+03 2.165000e+03
## insertionLoci 1.528000e+03 1.510000e+03
## deletionEventCt 2.888000e+03 3.102000e+03
## insertionEventCt 2.125000e+03 2.188000e+03
## highCoverageDeletionLoci 3.200000e+01 3.600000e+01
## highCoverageInsertionLoci 1.800000e+01 1.900000e+01
## OnTargetCount 1.845480e+05 1.921260e+05
## OffTargetCount 5.264500e+04 5.599100e+04
## OnTargetReadBases 5.509926e+07 5.741110e+07
## OnTargetReadPairBases 3.695125e+07 3.841159e+07
## AvgTargetReadDepth 9.930000e+00 1.030000e+01
## AvgTargetReadPairDepth 6.640000e+00 6.860000e+00
## TargetReadDepth 1.610000e+00 1.680000e+00
## TargetReadPairDepth 1.080000e+00 1.120000e+00
## OnTargetFraction 7.800000e-01 7.700000e-01
## TotalTargetSpan 3.416250e+07 3.416250e+07
## PAIR_CONTAINS_DEL 2.844000e+03 3.057000e+03
## PAIR_CONTAINS_INS 2.034000e+03 2.169000e+03
## PAIR_CONTAINS_INS_AND_DEL 4.800000e+01 5.500000e+01
## PAIR_CONTAINS_INDEL 4.830000e+03 5.171000e+03
## PAIR_CONTAINS_NO_INDEL 2.323630e+05 2.429460e+05
## READ_CONTAINS_DEL_R1 1.385000e+03 1.460000e+03
## READ_CONTAINS_INS_R1 1.008000e+03 1.098000e+03
## READ_CONTAINS_NO_INDEL_R1 2.348110e+05 2.455680e+05
## READ_CONTAINS_DEL_R2 1.459000e+03 1.597000e+03
## READ_CONTAINS_INS_R2 1.026000e+03 1.071000e+03
## READ_CONTAINS_NO_INDEL_R2 2.347220e+05 2.454660e+05
## NO_REF_BASE_SWAP_R1 1.903780e+05 2.053210e+05
## HAS_REF_BASE_SWAP_R1 4.681500e+04 4.279600e+04
## NO_REF_BASE_SWAP_R2 1.956890e+05 2.078550e+05
## HAS_REF_BASE_SWAP_R2 4.150400e+04 4.026200e+04
## PERFECT_REF_MATCH_PAIR 1.718110e+05 1.873210e+05
## OM_noOverlap_staggered 0.000000e+00 0.000000e+00
## OM_noOverlap_normal 1.629300e+04 1.712700e+04
## OM_overlap 2.209000e+05 2.309890e+05
## OM_BAD_OVERLAP 0.000000e+00 1.000000e+00
## OM_overlap_Match 1.930910e+05 2.147380e+05
## OM_overlap_mismatch 2.780900e+04 1.625100e+04
## NumReadsAtMaxReadLength_R1 2.371930e+05 2.481170e+05
## NumReadsAtMaxReadLength_R2 2.371930e+05 2.481170e+05
## NumReadsTruncated_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_25pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_50pct_R2 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R1 0.000000e+00 0.000000e+00
## NumReadsTruncated_75pct_R2 0.000000e+00 0.000000e+00
## FQ_AVG_GC_R1 4.400000e-01 4.400000e-01
## FQ_AVG_GC_R2 4.400000e-01 4.400000e-01
## FQ_AVG_GC 4.400000e-01 4.400000e-01
## READ_LENGTH 1.010000e+02 1.010000e+02
## COMPLETED_WITHOUT_WARNING 1.000000e+00 1.000000e+00
## QoRTs_initTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_samDoneTimeStamp 1.510600e+12 1.510600e+12
## QoRTs_majorVer 1.000000e+00 1.000000e+00
## QoRTs_minorVer 2.000000e+00 2.000000e+00
## QoRTs_patchVer 4.200000e+01 4.200000e+01
## QoRTs_compileTimeStamp 1.496421e+09 1.496421e+09
## COMPLETED_WITHOUT_ERROR 1.000000e+00 1.000000e+00
## SpliceLoci_Known_Covered 4.029000e+03 4.067000e+03
## SpliceLoci_Novel_Covered 2.764000e+03 2.860000e+03
## SpliceLoci_Covered 6.793000e+03 6.927000e+03
## InsertSize_Mean 1.477670e+03 1.521470e+03
## InsertSize_Median 1.300000e+02 1.300000e+02
## GC_byPair_Mean 9.008000e+01 9.014000e+01
## GC_byPair_Median 9.100000e+01 9.100000e+01
## GC_byRead_Mean 4.504000e+01 4.507000e+01
## GC_byRead_Median 4.500000e+01 4.500000e+01
## GeneBodyCoverage_Overall_Mean 5.000000e-01 5.000000e-01
## GeneBodyCoverage_Overall_Median 5.100000e-01 5.100000e-01
## GeneBodyCoverage_LowExpress_Mean 4.900000e-01 4.900000e-01
## GeneBodyCoverage_LowExpress_Median 4.900000e-01 4.900000e-01
## GeneBodyCoverage_UMQuartile_Mean 4.800000e-01 4.800000e-01
## GeneBodyCoverage_UMQuartile_Median 4.600000e-01 4.600000e-01
## geneDiversityProfile_top1count 4.699000e+03 4.822000e+03
## geneDiversityProfile_top10count 2.323500e+04 2.403300e+04
## geneDiversityProfile_top100count 6.792100e+04 7.067500e+04
## geneDiversityProfile_top1000count 9.052600e+04 9.458200e+04
## geneDiversityProfile_top1pct 5.000000e-02 5.000000e-02
## geneDiversityProfile_top10pct 2.600000e-01 2.500000e-01
## geneDiversityProfile_top100pct 7.500000e-01 7.500000e-01
## geneDiversityProfile_top1000pct 1.000000e+00 1.000000e+00
## input.read.pair.count 4.588100e+05 4.777510e+05
## total.aligned.rate 6.300000e-01 6.400000e-01
## aligned.and.pf.rate 5.200000e-01 5.200000e-01
## overlapMismatchRate.byMinQual.noIndel_2 0.000000e+00 0.000000e+00
## overlapMismatchRate.byMinQual.noIndel_5 3.204177e+01 3.796270e+01
## overlapMismatchRate.byMinQual.noIndel_6 2.086516e+01 2.567782e+01
## overlapMismatchRate.byMinQual.noIndel_7 1.704555e+01 1.991986e+01
## overlapMismatchRate.byMinQual.noIndel_8 1.122823e+01 1.353108e+01
## overlapMismatchRate.byMinQual.noIndel_9 8.603155e+00 1.086835e+01
## overlapMismatchRate.byMinQual.noIndel_10 8.283918e+00 9.839918e+00
## overlapMismatchRate.byMinQual.noIndel_11 3.167249e+00 4.056020e+00
## overlapMismatchRate.byMinQual.noIndel_12 4.237842e+00 5.357272e+00
## overlapMismatchRate.byMinQual.noIndel_13 2.207017e+00 2.547185e+00
## overlapMismatchRate.byMinQual.noIndel_14 2.173487e+00 3.180130e+00
## overlapMismatchRate.byMinQual.noIndel_15 2.864001e+00 4.455465e+00
## overlapMismatchRate.byMinQual.noIndel_16 1.853755e+00 2.771226e+00
## overlapMismatchRate.byMinQual.noIndel_17 1.785252e+00 2.610359e+00
## overlapMismatchRate.byMinQual.noIndel_18 1.376476e+00 2.162535e+00
## overlapMismatchRate.byMinQual.noIndel_19 1.450985e+00 2.431306e+00
## overlapMismatchRate.byMinQual.noIndel_20 1.026667e+00 1.629043e+00
## overlapMismatchRate.byMinQual.noIndel_21 5.328748e-01 8.086842e-01
## overlapMismatchRate.byMinQual.noIndel_22 4.939620e-01 7.312654e-01
## overlapMismatchRate.byMinQual.noIndel_23 6.487363e-01 9.830732e-01
## overlapMismatchRate.byMinQual.noIndel_24 5.023145e-01 9.241112e-01
## overlapMismatchRate.byMinQual.noIndel_25 4.830145e-01 8.140225e-01
## overlapMismatchRate.byMinQual.noIndel_26 2.533121e-01 3.751201e-01
## overlapMismatchRate.byMinQual.noIndel_27 3.451828e-01 6.018681e-01
## overlapMismatchRate.byMinQual.noIndel_28 2.243961e-01 2.478337e-01
## overlapMismatchRate.byMinQual.noIndel_29 2.421677e-01 3.843118e-01
## overlapMismatchRate.byMinQual.noIndel_30 1.927004e-01 2.446455e-01
## overlapMismatchRate.byMinQual.noIndel_31 1.693667e-01 2.492009e-01
## overlapMismatchRate.byMinQual.noIndel_32 1.572512e-01 1.951413e-01
## overlapMismatchRate.byMinQual.noIndel_33 1.612743e-01 2.001919e-01
## overlapMismatchRate.byMinQual.noIndel_34 1.117982e-01 1.151572e-01
## overlapMismatchRate.byMinQual.noIndel_35 1.035186e-01 1.024739e-01
## overlapMismatchRate.byMinQual.noIndel_36 9.567507e-02 9.917125e-02
## overlapMismatchRate.byMinQual.noIndel_37 8.796968e-02 8.800678e-02
## overlapMismatchRate.byMinQual.noIndel_38 9.219406e-02 9.119100e-02
## overlapMismatchRate.byMinQual.noIndel_39 9.409936e-02 9.070761e-02
## overlapMismatchRate.byMinQual.noIndel_40 7.516906e-02 6.734315e-02
## overlapMismatchRate.byMinQual.noIndel_41 7.017871e-02 6.101214e-02