R: Chromosome type rate plot

makePlot.runTimePerformance {QoRTs}

R Documentation

Chromosome type rate plot

Plots the number or percent of read-pairs falling on each type of chromosome.

  makePlot.runTimePerformance(plotter,
                 debugMode, singleEndMode,
                 plot = TRUE,
                 ...)

`plotter`	A `QoRT_Plotter` reference object. See `build.plotter`.
`debugMode`	Logical. If TRUE, debugging data will be printed to the console.
`singleEndMode`	Logical. Determines whether the dataset consists of single-ended reads. By default this is determined from the data. Thus, this parameter should never need to be set by the user.
`plot`	Logical. If FALSE, suppress plotting and return `TRUE` if and only if the data is present in the dataset to allow plotting. Useful to automatically filter out missing data plots.
`...`	Arguments to be passed to methods, such as graphical parameters (see `par`).

For each sample run, indicates the amount of time spent running the QoRTs QC data processing tool

By default, this function returns nothing. If the return.table parameter is TRUE, then it returns a data.frame with the data that was plotted.

  data(res,package="QoRTsExampleData");
  plotter <- build.plotter.colorByGroup(res);
  makePlot.runTimePerformance(plotter);

## Starting: QoRTs Runtime Performance plot.

## Finished: QoRTs Runtime Performance plot.[time: 2018-09-25 13:13:16],[elapsed: 0.12 secs]

plot of chunk unnamed-chunk-1

[Package QoRTs version 1.3.6 Index]