R: Strandedness Test Plot

makePlot.strandedness.test {QoRTs}

R Documentation

Strandedness Test Plot

Plots the apparent strandedness of the reads.

makePlot.strandedness.test(plotter, plot.target.boxes = FALSE, 
                           debugMode, singleEndMode, plot = TRUE, ...)

`plotter`	A `QoRT_Plotter` reference object. See `build.plotter`.
`plot.target.boxes`	A logical value. If true, then green target boxes will be printed over the area in which all points should be expected to fall.
`debugMode`	Logical. If TRUE, debugging data will be printed to the console.
`singleEndMode`	Logical. Determines whether the dataset consists of single-ended reads. By default this is determined from the data. Thus, this parameter should never need to be set by the user.
`plot`	Logical. If FALSE, suppress plotting and return `TRUE` if and only if the data is present in the dataset to allow plotting. Useful to automatically filter out missing data plots.
`...`	Arguments to be passed to methods, such as graphical parameters (see `par`).

TODO!

  data(res,package="QoRTsExampleData");
  plotter <- build.plotter.colorByGroup(res);
  makePlot.strandedness.test(plotter);

## Starting: Strandedness Test plot.

## Finished: Strandedness Test plot.[time: 2018-09-25 13:13:27],[elapsed: 0.06 secs]

  #Add a legend:
  makePlot.legend.over("topright", plotter)

plot of chunk unnamed-chunk-1

[Package QoRTs version 1.3.6 Index]