| get.summary.table {QoRTs} | R Documentation |
Retrieves and compiles a summary data table.
get.summary.table(res, outfile, debugMode);
get.size.factors(res,
sf.method = c("DESeq2","DESeq2_GEO","TC",
"edgeR","edgeR_TMM","edgeR_UQ","edgeR_RLE"),
outfile, debugMode)
res |
A |
outfile |
Optional. A file name where the table should be written. |
sf.method |
The size factor method to use. Note that most of these methods (except "TC") are reliant on external packages not included with QoRTs. You will need to install DESeq2 and edgeR to use these methods. |
debugMode |
Logical. If TRUE, debugging data will be printed to the console. |
Returns summary data in table form.