| makePlot.NVC.clip.matchByClipPosition {QoRTs} | R Documentation |
WARNING: THESE FUNCTIONS ARE BETA, AND ARE NOT FULLY TESTED OR READY FOR GENERAL USE.
makePlot.NVC.lead.clip.matchByClipPosition(plotter,
clip.amt, r2.buffer,
label.majority.bases = TRUE,
label.majority.bases.threshold = 0.5,
label.majority.bases.cex = 1,
rasterize.plotting.area = FALSE,
raster.height = 1000,
raster.width = 1000,
show.base.legend = TRUE,
load.results = TRUE,
debugMode, singleEndMode, ...)
makePlot.NVC.tail.clip.matchByClipPosition(plotter,
clip.amt, r2.buffer,
label.majority.bases = TRUE,
label.majority.bases.threshold = 0.5,
label.majority.bases.cex = 1,
rasterize.plotting.area = FALSE,
raster.height = 1000,
raster.width = 1000,
show.base.legend = TRUE,
debugMode, singleEndMode, ...)
plotter |
A |
clip.amt |
UNDOCUMENTED |
r2.buffer |
UNDOCUMENTED |
label.majority.bases |
UNDOCUMENTED |
label.majority.bases.threshold |
UNDOCUMENTED |
label.majority.bases.cex |
UNDOCUMENTED |
show.base.legend |
UNDOCUMENTED |
rasterize.plotting.area |
Logical. If TRUE, the plotting area will be written to a temp
png file then drawn to the current device as a raster image.
This option is generally preferred for vector devices, because
NVC plots can be very large when drawn in vector format.
Note: this requires the |
raster.height |
Numeric. If rasterize.plotting.area is TRUE, then this is the height of the plotting area raster image, in pixels. |
raster.width |
Numeric. If rasterize.plotting.area is TRUE, then this is the width of the plotting area raster image, in pixels. |
load.results |
UNDOCUMENTED |
debugMode |
UNDOCUMENTED |
singleEndMode |
Logical. Determines whether the dataset consists of single-ended reads. By default this is determined from the data. Thus, this parameter should never need to be set by the user. |
... |
Arguments to be passed to methods, such as
graphical parameters (see |
This function is currently BETA, and is not intended for general use. Documentation and testing is still pending.