8.4 Running Apps

Or, if you prefer, you can run via the dx command line:

dx run app-gatk4_genotypegvcfs_single_sample_parallel \
    -i --variant_gvcf     /testdata/mySingleSampleGVCF.g.vcf.gz \
    -i --genome_fastagz   /testdata/myGenomeFasta.fasta.gz \
    --destination         /my/output/dir